Experiment: Rifampicin 0.000625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0782 and hisG are separated by 32 nucleotides hisG and Synpcc7942_0784 are separated by 285 nucleotides Synpcc7942_0784 and ponA overlap by 68 nucleotides
Synpcc7942_0782: Synpcc7942_0782 - ATPase, at 776,760 to 778,556
_0782
Synpcc7942_0783: hisG - ATP phosphoribosyltransferase catalytic subunit, at 778,589 to 779,245
hisG
Synpcc7942_0784: Synpcc7942_0784 - hypothetical protein, at 779,531 to 779,848
_0784
Synpcc7942_0785: ponA - Penicillin-binding protein 1A, at 779,781 to 781,919
ponA
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 777.889 kb on - strand, within Synpcc7942_0782 at 777.953 kb on - strand, within Synpcc7942_0782 at 778.009 kb on - strand, within Synpcc7942_0782 at 778.012 kb on + strand, within Synpcc7942_0782 at 778.039 kb on + strand, within Synpcc7942_0782 at 778.047 kb on - strand, within Synpcc7942_0782 at 778.047 kb on - strand, within Synpcc7942_0782 at 778.113 kb on - strand, within Synpcc7942_0782 at 778.133 kb on - strand, within Synpcc7942_0782 at 778.191 kb on + strand, within Synpcc7942_0782 at 778.198 kb on + strand, within Synpcc7942_0782 at 778.206 kb on - strand, within Synpcc7942_0782 at 778.272 kb on - strand, within Synpcc7942_0782 at 778.277 kb on - strand at 778.277 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.326 kb on + strand, within Synpcc7942_0782 at 778.329 kb on - strand, within Synpcc7942_0782 at 778.332 kb on + strand, within Synpcc7942_0782 at 778.345 kb on - strand, within Synpcc7942_0782 at 778.345 kb on - strand, within Synpcc7942_0782 at 778.364 kb on + strand, within Synpcc7942_0782 at 778.372 kb on - strand, within Synpcc7942_0782 at 778.378 kb on + strand at 778.386 kb on - strand at 778.391 kb on - strand at 778.391 kb on - strand at 778.429 kb on + strand at 778.437 kb on - strand at 778.449 kb on - strand at 778.480 kb on + strand at 778.501 kb on + strand at 778.501 kb on + strand at 778.509 kb on - strand at 778.545 kb on - strand at 778.547 kb on - strand at 778.573 kb on - strand at 778.575 kb on + strand at 778.575 kb on + strand at 778.580 kb on + strand at 778.583 kb on - strand at 778.583 kb on - strand at 778.610 kb on - strand at 778.612 kb on + strand at 778.622 kb on - strand at 779.280 kb on - strand at 779.284 kb on + strand at 779.297 kb on - strand at 779.307 kb on - strand at 779.312 kb on - strand at 779.314 kb on + strand at 779.322 kb on - strand at 779.322 kb on - strand at 779.322 kb on - strand at 779.324 kb on + strand at 779.326 kb on + strand at 779.348 kb on - strand at 779.353 kb on - strand at 779.357 kb on + strand at 779.369 kb on + strand at 779.398 kb on - strand at 779.447 kb on + strand at 779.455 kb on - strand at 779.491 kb on + strand at 779.497 kb on - strand at 779.499 kb on - strand at 779.515 kb on - strand at 779.531 kb on + strand at 779.539 kb on - strand at 779.555 kb on + strand at 779.563 kb on - strand, within Synpcc7942_0784 at 779.581 kb on + strand, within Synpcc7942_0784 at 779.604 kb on + strand, within Synpcc7942_0784 at 779.612 kb on + strand, within Synpcc7942_0784 at 779.612 kb on + strand, within Synpcc7942_0784 at 779.619 kb on - strand, within Synpcc7942_0784 at 779.620 kb on - strand, within Synpcc7942_0784 at 779.653 kb on + strand at 779.742 kb on + strand, within Synpcc7942_0784 at 779.745 kb on - strand, within Synpcc7942_0784 at 779.750 kb on - strand, within Synpcc7942_0784 at 779.756 kb on - strand, within Synpcc7942_0784 at 779.791 kb on + strand at 779.822 kb on - strand at 779.822 kb on - strand at 779.843 kb on + strand at 779.850 kb on - strand at 779.895 kb on - strand at 779.896 kb on - strand at 779.923 kb on - strand at 779.944 kb on + strand at 779.964 kb on - strand at 779.968 kb on - strand at 779.982 kb on + strand at 780.003 kb on - strand, within ponA at 780.015 kb on + strand, within ponA at 780.020 kb on + strand, within ponA at 780.020 kb on + strand at 780.025 kb on + strand, within ponA at 780.028 kb on - strand, within ponA at 780.028 kb on - strand, within ponA at 780.028 kb on - strand, within ponA at 780.038 kb on - strand, within ponA at 780.051 kb on - strand, within ponA at 780.061 kb on + strand, within ponA at 780.061 kb on - strand, within ponA at 780.065 kb on + strand, within ponA at 780.071 kb on + strand, within ponA at 780.073 kb on - strand, within ponA at 780.075 kb on + strand, within ponA at 780.076 kb on + strand, within ponA at 780.084 kb on + strand, within ponA at 780.096 kb on - strand, within ponA at 780.098 kb on - strand, within ponA at 780.099 kb on - strand, within ponA at 780.141 kb on - strand, within ponA at 780.146 kb on + strand, within ponA at 780.157 kb on - strand, within ponA at 780.177 kb on + strand, within ponA at 780.202 kb on + strand, within ponA at 780.210 kb on - strand, within ponA at 780.224 kb on + strand, within ponA at 780.237 kb on - strand, within ponA at 780.242 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml remove 777,889 - Synpcc7942_0782 0.63 -0.7 777,953 - Synpcc7942_0782 0.66 +1.3 778,009 - Synpcc7942_0782 0.70 -3.3 778,012 + Synpcc7942_0782 0.70 +0.2 778,039 + Synpcc7942_0782 0.71 +0.2 778,047 - Synpcc7942_0782 0.72 +0.2 778,047 - Synpcc7942_0782 0.72 -0.5 778,113 - Synpcc7942_0782 0.75 -1.8 778,133 - Synpcc7942_0782 0.76 +1.9 778,191 + Synpcc7942_0782 0.80 +0.2 778,198 + Synpcc7942_0782 0.80 -3.0 778,206 - Synpcc7942_0782 0.80 -0.8 778,272 - Synpcc7942_0782 0.84 -2.1 778,277 - +1.8 778,277 - Synpcc7942_0782 0.84 -0.8 778,324 - Synpcc7942_0782 0.87 -0.2 778,324 - Synpcc7942_0782 0.87 +0.4 778,324 - Synpcc7942_0782 0.87 +0.5 778,324 - Synpcc7942_0782 0.87 -0.8 778,326 + Synpcc7942_0782 0.87 -1.4 778,329 - Synpcc7942_0782 0.87 -1.6 778,332 + Synpcc7942_0782 0.87 -2.8 778,345 - Synpcc7942_0782 0.88 -1.4 778,345 - Synpcc7942_0782 0.88 -2.4 778,364 + Synpcc7942_0782 0.89 +0.2 778,372 - Synpcc7942_0782 0.90 +1.2 778,378 + +1.2 778,386 - -1.4 778,391 - -1.6 778,391 - +3.6 778,429 + -0.8 778,437 - +0.2 778,449 - +0.8 778,480 + +1.3 778,501 + +1.6 778,501 + -0.3 778,509 - -0.3 778,545 - -0.8 778,547 - -1.8 778,573 - -0.9 778,575 + -2.1 778,575 + +1.3 778,580 + -3.1 778,583 - +1.2 778,583 - -0.8 778,610 - +1.8 778,612 + +0.6 778,622 - -1.4 779,280 - +2.3 779,284 + -2.5 779,297 - -1.1 779,307 - -2.2 779,312 - -2.0 779,314 + +0.8 779,322 - +0.8 779,322 - +1.7 779,322 - +0.2 779,324 + -1.0 779,326 + -2.1 779,348 - +1.8 779,353 - -0.6 779,357 + -2.0 779,369 + +1.2 779,398 - -2.4 779,447 + -1.6 779,455 - +0.2 779,491 + +0.2 779,497 - +1.8 779,499 - -1.4 779,515 - -0.8 779,531 + +1.2 779,539 - -0.6 779,555 + -1.8 779,563 - Synpcc7942_0784 0.10 -1.6 779,581 + Synpcc7942_0784 0.16 +0.0 779,604 + Synpcc7942_0784 0.23 -1.9 779,612 + Synpcc7942_0784 0.25 -2.4 779,612 + Synpcc7942_0784 0.25 +0.6 779,619 - Synpcc7942_0784 0.28 -0.8 779,620 - Synpcc7942_0784 0.28 +2.1 779,653 + +1.2 779,742 + Synpcc7942_0784 0.66 +0.8 779,745 - Synpcc7942_0784 0.67 +1.1 779,750 - Synpcc7942_0784 0.69 +0.2 779,756 - Synpcc7942_0784 0.71 -0.0 779,791 + +3.2 779,822 - -3.0 779,822 - +1.0 779,843 + +2.8 779,850 - +1.7 779,895 - -2.3 779,896 - +0.6 779,923 - -0.8 779,944 + -0.8 779,964 - -1.8 779,968 - +0.7 779,982 + +0.3 780,003 - ponA Synpcc7942_0785 0.10 +2.0 780,015 + ponA Synpcc7942_0785 0.11 +1.5 780,020 + ponA Synpcc7942_0785 0.11 +1.6 780,020 + +0.2 780,025 + ponA Synpcc7942_0785 0.11 +0.6 780,028 - ponA Synpcc7942_0785 0.12 +1.7 780,028 - ponA Synpcc7942_0785 0.12 +0.8 780,028 - ponA Synpcc7942_0785 0.12 +0.1 780,038 - ponA Synpcc7942_0785 0.12 +1.5 780,051 - ponA Synpcc7942_0785 0.13 -0.8 780,061 + ponA Synpcc7942_0785 0.13 -2.3 780,061 - ponA Synpcc7942_0785 0.13 -1.3 780,065 + ponA Synpcc7942_0785 0.13 +1.1 780,071 + ponA Synpcc7942_0785 0.14 +2.1 780,073 - ponA Synpcc7942_0785 0.14 +2.1 780,075 + ponA Synpcc7942_0785 0.14 -1.4 780,076 + ponA Synpcc7942_0785 0.14 +0.4 780,084 + ponA Synpcc7942_0785 0.14 -3.0 780,096 - ponA Synpcc7942_0785 0.15 -0.3 780,098 - ponA Synpcc7942_0785 0.15 +0.2 780,099 - ponA Synpcc7942_0785 0.15 -1.8 780,141 - ponA Synpcc7942_0785 0.17 +1.4 780,146 + ponA Synpcc7942_0785 0.17 -0.8 780,157 - ponA Synpcc7942_0785 0.18 -0.6 780,177 + ponA Synpcc7942_0785 0.19 +0.2 780,202 + ponA Synpcc7942_0785 0.20 +0.5 780,210 - ponA Synpcc7942_0785 0.20 +2.5 780,224 + ponA Synpcc7942_0785 0.21 -0.8 780,237 - ponA Synpcc7942_0785 0.21 -1.4 780,242 + +0.2
Or see this region's nucleotide sequence