Experiment: Rifampicin 0.000625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt groEL and Synpcc7942_0686 are separated by 429 nucleotides Synpcc7942_0686 and Synpcc7942_0687 overlap by 11 nucleotides
Synpcc7942_0685: groEL - chaperonin GroEL, at 678,881 to 680,548
groEL
Synpcc7942_0686: Synpcc7942_0686 - FO synthase subunit 2, at 680,978 to 682,138
_0686
Synpcc7942_0687: Synpcc7942_0687 - hypothetical protein, at 682,128 to 683,747
_0687
Position (kb) 680
681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 680.019 kb on - strand, within groEL at 680.034 kb on + strand, within groEL at 680.067 kb on + strand, within groEL at 680.079 kb on + strand, within groEL at 680.106 kb on + strand, within groEL at 680.116 kb on - strand, within groEL at 680.130 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.143 kb on + strand, within groEL at 680.150 kb on + strand, within groEL at 680.151 kb on - strand, within groEL at 680.158 kb on - strand, within groEL at 680.176 kb on + strand, within groEL at 680.239 kb on - strand, within groEL at 680.242 kb on - strand, within groEL at 680.261 kb on + strand, within groEL at 680.266 kb on + strand, within groEL at 680.267 kb on - strand, within groEL at 680.269 kb on - strand at 680.276 kb on - strand, within groEL at 680.336 kb on + strand, within groEL at 680.338 kb on - strand, within groEL at 680.338 kb on - strand, within groEL at 680.371 kb on + strand, within groEL at 680.379 kb on - strand, within groEL at 680.379 kb on - strand, within groEL at 680.497 kb on + strand at 680.540 kb on - strand at 680.545 kb on - strand at 680.550 kb on - strand at 680.572 kb on - strand at 680.572 kb on - strand at 680.594 kb on - strand at 680.652 kb on + strand at 680.679 kb on + strand at 680.686 kb on + strand at 680.705 kb on + strand at 680.712 kb on + strand at 680.814 kb on + strand at 680.817 kb on + strand at 680.822 kb on - strand at 680.826 kb on + strand at 680.826 kb on + strand at 680.834 kb on - strand at 680.870 kb on + strand at 680.870 kb on + strand at 680.878 kb on - strand at 680.932 kb on - strand at 680.963 kb on + strand at 680.968 kb on + strand at 681.094 kb on + strand, within Synpcc7942_0686 at 681.118 kb on - strand, within Synpcc7942_0686 at 681.120 kb on + strand, within Synpcc7942_0686 at 681.123 kb on + strand, within Synpcc7942_0686 at 681.138 kb on - strand, within Synpcc7942_0686 at 681.232 kb on + strand, within Synpcc7942_0686 at 681.235 kb on - strand, within Synpcc7942_0686 at 681.325 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.400 kb on - strand, within Synpcc7942_0686 at 681.482 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand at 681.490 kb on - strand, within Synpcc7942_0686 at 681.492 kb on - strand, within Synpcc7942_0686 at 681.525 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.593 kb on + strand, within Synpcc7942_0686 at 681.615 kb on + strand, within Synpcc7942_0686 at 681.615 kb on - strand, within Synpcc7942_0686 at 681.615 kb on - strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.660 kb on - strand, within Synpcc7942_0686 at 681.660 kb on - strand, within Synpcc7942_0686 at 681.671 kb on - strand, within Synpcc7942_0686 at 681.680 kb on - strand, within Synpcc7942_0686 at 681.686 kb on - strand, within Synpcc7942_0686 at 681.760 kb on + strand, within Synpcc7942_0686 at 681.767 kb on - strand, within Synpcc7942_0686 at 681.814 kb on + strand, within Synpcc7942_0686 at 681.819 kb on + strand, within Synpcc7942_0686 at 681.822 kb on - strand, within Synpcc7942_0686 at 681.848 kb on - strand, within Synpcc7942_0686 at 681.850 kb on + strand, within Synpcc7942_0686 at 681.865 kb on + strand, within Synpcc7942_0686 at 681.869 kb on + strand, within Synpcc7942_0686 at 681.870 kb on + strand, within Synpcc7942_0686 at 681.882 kb on - strand, within Synpcc7942_0686 at 681.883 kb on - strand, within Synpcc7942_0686 at 681.904 kb on + strand, within Synpcc7942_0686 at 681.925 kb on - strand, within Synpcc7942_0686 at 681.926 kb on - strand, within Synpcc7942_0686 at 681.928 kb on + strand, within Synpcc7942_0686 at 681.928 kb on + strand, within Synpcc7942_0686 at 681.928 kb on + strand, within Synpcc7942_0686 at 681.936 kb on - strand, within Synpcc7942_0686 at 681.938 kb on + strand, within Synpcc7942_0686 at 681.938 kb on + strand, within Synpcc7942_0686 at 681.938 kb on + strand, within Synpcc7942_0686 at 681.946 kb on - strand, within Synpcc7942_0686 at 682.021 kb on - strand at 682.026 kb on - strand at 682.026 kb on - strand at 682.027 kb on + strand at 682.028 kb on + strand at 682.051 kb on - strand at 682.053 kb on - strand at 682.077 kb on + strand at 682.077 kb on + strand at 682.077 kb on + strand at 682.077 kb on + strand at 682.085 kb on - strand at 682.085 kb on - strand at 682.107 kb on - strand at 682.113 kb on - strand at 682.124 kb on + strand at 682.124 kb on + strand at 682.127 kb on - strand at 682.141 kb on - strand at 682.153 kb on + strand at 682.153 kb on + strand at 682.153 kb on + strand at 682.161 kb on - strand at 682.221 kb on - strand at 682.222 kb on - strand at 682.299 kb on + strand, within Synpcc7942_0687 at 682.311 kb on + strand, within Synpcc7942_0687 at 682.326 kb on + strand, within Synpcc7942_0687 at 682.349 kb on + strand, within Synpcc7942_0687 at 682.352 kb on - strand, within Synpcc7942_0687 at 682.352 kb on - strand, within Synpcc7942_0687 at 682.352 kb on - strand, within Synpcc7942_0687 at 682.354 kb on + strand, within Synpcc7942_0687 at 682.354 kb on + strand, within Synpcc7942_0687 at 682.357 kb on - strand, within Synpcc7942_0687 at 682.357 kb on - strand, within Synpcc7942_0687 at 682.367 kb on - strand, within Synpcc7942_0687 at 682.367 kb on - strand, within Synpcc7942_0687 at 682.384 kb on + strand, within Synpcc7942_0687 at 682.391 kb on + strand, within Synpcc7942_0687 at 682.395 kb on + strand, within Synpcc7942_0687 at 682.405 kb on + strand, within Synpcc7942_0687 at 682.405 kb on + strand, within Synpcc7942_0687 at 682.405 kb on + strand, within Synpcc7942_0687 at 682.445 kb on - strand, within Synpcc7942_0687 at 682.475 kb on + strand, within Synpcc7942_0687 at 682.477 kb on - strand, within Synpcc7942_0687 at 682.486 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.506 kb on - strand, within Synpcc7942_0687 at 682.507 kb on - strand, within Synpcc7942_0687 at 682.519 kb on - strand, within Synpcc7942_0687 at 682.552 kb on + strand, within Synpcc7942_0687 at 682.552 kb on + strand, within Synpcc7942_0687 at 682.552 kb on + strand, within Synpcc7942_0687 at 682.560 kb on - strand, within Synpcc7942_0687 at 682.619 kb on - strand, within Synpcc7942_0687 at 682.623 kb on + strand, within Synpcc7942_0687 at 682.626 kb on - strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.654 kb on + strand, within Synpcc7942_0687 at 682.662 kb on - strand, within Synpcc7942_0687 at 682.687 kb on - strand, within Synpcc7942_0687 at 682.713 kb on - strand, within Synpcc7942_0687 at 682.735 kb on + strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.753 kb on - strand, within Synpcc7942_0687 at 682.754 kb on + strand, within Synpcc7942_0687 at 682.771 kb on + strand, within Synpcc7942_0687 at 682.787 kb on + strand, within Synpcc7942_0687 at 682.789 kb on - strand, within Synpcc7942_0687 at 682.795 kb on - strand, within Synpcc7942_0687 at 682.803 kb on + strand, within Synpcc7942_0687 at 682.825 kb on + strand, within Synpcc7942_0687 at 682.830 kb on + strand, within Synpcc7942_0687 at 682.838 kb on - strand, within Synpcc7942_0687 at 682.916 kb on + strand, within Synpcc7942_0687 at 682.916 kb on + strand, within Synpcc7942_0687 at 682.922 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 683.097 kb on + strand, within Synpcc7942_0687 at 683.105 kb on + strand, within Synpcc7942_0687 at 683.116 kb on - strand, within Synpcc7942_0687 at 683.116 kb on - strand, within Synpcc7942_0687 at 683.121 kb on - strand, within Synpcc7942_0687
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml remove 680,019 - groEL Synpcc7942_0685 0.68 +3.2 680,034 + groEL Synpcc7942_0685 0.69 -0.1 680,067 + groEL Synpcc7942_0685 0.71 +1.1 680,079 + groEL Synpcc7942_0685 0.72 +0.1 680,106 + groEL Synpcc7942_0685 0.73 +0.8 680,116 - groEL Synpcc7942_0685 0.74 +1.8 680,130 + groEL Synpcc7942_0685 0.75 -1.6 680,132 + groEL Synpcc7942_0685 0.75 +0.3 680,132 + groEL Synpcc7942_0685 0.75 +3.7 680,132 + groEL Synpcc7942_0685 0.75 +2.7 680,143 + groEL Synpcc7942_0685 0.76 +2.7 680,150 + groEL Synpcc7942_0685 0.76 +1.3 680,151 - groEL Synpcc7942_0685 0.76 +0.7 680,158 - groEL Synpcc7942_0685 0.77 +0.5 680,176 + groEL Synpcc7942_0685 0.78 +2.0 680,239 - groEL Synpcc7942_0685 0.81 +1.9 680,242 - groEL Synpcc7942_0685 0.82 -2.1 680,261 + groEL Synpcc7942_0685 0.83 -0.9 680,266 + groEL Synpcc7942_0685 0.83 +0.8 680,267 - groEL Synpcc7942_0685 0.83 +0.9 680,269 - +0.3 680,276 - groEL Synpcc7942_0685 0.84 +2.2 680,336 + groEL Synpcc7942_0685 0.87 +1.0 680,338 - groEL Synpcc7942_0685 0.87 +1.0 680,338 - groEL Synpcc7942_0685 0.87 +1.1 680,371 + groEL Synpcc7942_0685 0.89 +0.6 680,379 - groEL Synpcc7942_0685 0.90 +0.1 680,379 - groEL Synpcc7942_0685 0.90 +2.3 680,497 + +1.2 680,540 - -0.3 680,545 - +3.2 680,550 - +0.3 680,572 - -1.7 680,572 - -1.3 680,594 - +0.5 680,652 + -0.7 680,679 + +0.2 680,686 + -2.1 680,705 + +0.5 680,712 + -0.6 680,814 + -1.3 680,817 + -2.1 680,822 - -0.0 680,826 + -0.6 680,826 + +0.7 680,834 - -0.4 680,870 + -3.6 680,870 + -0.1 680,878 - +0.3 680,932 - +0.2 680,963 + -0.3 680,968 + -1.7 681,094 + Synpcc7942_0686 0.10 +0.3 681,118 - Synpcc7942_0686 0.12 -1.6 681,120 + Synpcc7942_0686 0.12 -1.3 681,123 + Synpcc7942_0686 0.12 +0.3 681,138 - Synpcc7942_0686 0.14 -0.6 681,232 + Synpcc7942_0686 0.22 -0.3 681,235 - Synpcc7942_0686 0.22 -0.1 681,325 + Synpcc7942_0686 0.30 -1.7 681,387 + Synpcc7942_0686 0.35 -3.2 681,387 + Synpcc7942_0686 0.35 -0.1 681,387 + Synpcc7942_0686 0.35 -0.7 681,395 - Synpcc7942_0686 0.36 -0.3 681,395 - Synpcc7942_0686 0.36 -0.4 681,395 - Synpcc7942_0686 0.36 -0.7 681,395 - Synpcc7942_0686 0.36 +0.3 681,400 - Synpcc7942_0686 0.36 +1.4 681,482 + Synpcc7942_0686 0.43 -0.7 681,484 + Synpcc7942_0686 0.44 +3.1 681,484 + -1.3 681,490 - Synpcc7942_0686 0.44 +1.3 681,492 - Synpcc7942_0686 0.44 +1.5 681,525 + Synpcc7942_0686 0.47 -0.1 681,539 + Synpcc7942_0686 0.48 -2.9 681,539 + Synpcc7942_0686 0.48 -0.7 681,539 + Synpcc7942_0686 0.48 +0.3 681,593 + Synpcc7942_0686 0.53 -1.7 681,615 + Synpcc7942_0686 0.55 +2.4 681,615 - Synpcc7942_0686 0.55 +1.3 681,615 - Synpcc7942_0686 0.55 +2.5 681,652 + Synpcc7942_0686 0.58 -0.3 681,652 + Synpcc7942_0686 0.58 +0.3 681,652 + Synpcc7942_0686 0.58 -1.0 681,652 + Synpcc7942_0686 0.58 +0.9 681,652 + Synpcc7942_0686 0.58 +0.8 681,660 - Synpcc7942_0686 0.59 -1.0 681,660 - Synpcc7942_0686 0.59 -0.7 681,671 - Synpcc7942_0686 0.60 -1.3 681,680 - Synpcc7942_0686 0.60 +3.3 681,686 - Synpcc7942_0686 0.61 -0.5 681,760 + Synpcc7942_0686 0.67 -1.9 681,767 - Synpcc7942_0686 0.68 -2.9 681,814 + Synpcc7942_0686 0.72 +0.1 681,819 + Synpcc7942_0686 0.72 +0.8 681,822 - Synpcc7942_0686 0.73 +1.8 681,848 - Synpcc7942_0686 0.75 -0.7 681,850 + Synpcc7942_0686 0.75 +1.1 681,865 + Synpcc7942_0686 0.76 -2.1 681,869 + Synpcc7942_0686 0.77 -0.5 681,870 + Synpcc7942_0686 0.77 -0.2 681,882 - Synpcc7942_0686 0.78 -0.0 681,883 - Synpcc7942_0686 0.78 -1.6 681,904 + Synpcc7942_0686 0.80 +1.7 681,925 - Synpcc7942_0686 0.82 -1.7 681,926 - Synpcc7942_0686 0.82 +1.1 681,928 + Synpcc7942_0686 0.82 +2.5 681,928 + Synpcc7942_0686 0.82 -2.1 681,928 + Synpcc7942_0686 0.82 -2.3 681,936 - Synpcc7942_0686 0.83 -2.3 681,938 + Synpcc7942_0686 0.83 +0.6 681,938 + Synpcc7942_0686 0.83 +0.0 681,938 + Synpcc7942_0686 0.83 -2.9 681,946 - Synpcc7942_0686 0.83 -0.6 682,021 - -0.7 682,026 - +0.3 682,026 - +0.3 682,027 + +0.9 682,028 + -0.0 682,051 - -1.7 682,053 - +1.3 682,077 + +0.5 682,077 + +0.7 682,077 + +0.5 682,077 + -1.3 682,085 - +0.4 682,085 - +3.8 682,107 - -0.7 682,113 - -1.0 682,124 + -1.7 682,124 + +3.0 682,127 - +1.6 682,141 - +0.8 682,153 + +0.5 682,153 + -2.7 682,153 + -1.0 682,161 - +1.0 682,221 - -2.0 682,222 - -0.3 682,299 + Synpcc7942_0687 0.11 -0.0 682,311 + Synpcc7942_0687 0.11 -0.2 682,326 + Synpcc7942_0687 0.12 -0.3 682,349 + Synpcc7942_0687 0.14 -1.7 682,352 - Synpcc7942_0687 0.14 -2.2 682,352 - Synpcc7942_0687 0.14 -2.3 682,352 - Synpcc7942_0687 0.14 +1.3 682,354 + Synpcc7942_0687 0.14 -1.2 682,354 + Synpcc7942_0687 0.14 +0.6 682,357 - Synpcc7942_0687 0.14 +1.3 682,357 - Synpcc7942_0687 0.14 -2.3 682,367 - Synpcc7942_0687 0.15 -1.1 682,367 - Synpcc7942_0687 0.15 +1.3 682,384 + Synpcc7942_0687 0.16 -2.6 682,391 + Synpcc7942_0687 0.16 +0.8 682,395 + Synpcc7942_0687 0.16 +0.5 682,405 + Synpcc7942_0687 0.17 +1.5 682,405 + Synpcc7942_0687 0.17 +1.1 682,405 + Synpcc7942_0687 0.17 +0.7 682,445 - Synpcc7942_0687 0.20 -2.1 682,475 + Synpcc7942_0687 0.21 +0.3 682,477 - Synpcc7942_0687 0.22 +0.1 682,486 + Synpcc7942_0687 0.22 +0.4 682,498 + Synpcc7942_0687 0.23 -1.9 682,498 + Synpcc7942_0687 0.23 -1.3 682,498 + Synpcc7942_0687 0.23 +0.7 682,498 + Synpcc7942_0687 0.23 -0.9 682,506 - Synpcc7942_0687 0.23 +0.6 682,507 - Synpcc7942_0687 0.23 -2.7 682,519 - Synpcc7942_0687 0.24 -2.3 682,552 + Synpcc7942_0687 0.26 -3.2 682,552 + Synpcc7942_0687 0.26 -2.3 682,552 + Synpcc7942_0687 0.26 -0.2 682,560 - Synpcc7942_0687 0.27 -0.1 682,619 - Synpcc7942_0687 0.30 +1.0 682,623 + Synpcc7942_0687 0.31 +0.0 682,626 - Synpcc7942_0687 0.31 -0.7 682,628 + Synpcc7942_0687 0.31 -1.7 682,628 + Synpcc7942_0687 0.31 -0.9 682,628 + Synpcc7942_0687 0.31 -1.3 682,628 + Synpcc7942_0687 0.31 -1.3 682,628 + Synpcc7942_0687 0.31 +1.5 682,628 + Synpcc7942_0687 0.31 -2.1 682,628 + Synpcc7942_0687 0.31 -2.2 682,628 + Synpcc7942_0687 0.31 +0.3 682,636 - Synpcc7942_0687 0.31 +0.8 682,636 - Synpcc7942_0687 0.31 +1.6 682,636 - Synpcc7942_0687 0.31 -0.7 682,636 - Synpcc7942_0687 0.31 -1.1 682,636 - Synpcc7942_0687 0.31 -0.2 682,636 - Synpcc7942_0687 0.31 -1.5 682,636 - Synpcc7942_0687 0.31 +0.0 682,636 - Synpcc7942_0687 0.31 -2.3 682,636 - Synpcc7942_0687 0.31 +1.6 682,654 + Synpcc7942_0687 0.32 +0.1 682,662 - Synpcc7942_0687 0.33 -2.3 682,687 - Synpcc7942_0687 0.35 -0.3 682,713 - Synpcc7942_0687 0.36 +0.3 682,735 + Synpcc7942_0687 0.37 -0.6 682,743 - Synpcc7942_0687 0.38 -0.6 682,743 - Synpcc7942_0687 0.38 -0.7 682,743 - Synpcc7942_0687 0.38 +0.7 682,753 - Synpcc7942_0687 0.39 -1.9 682,754 + Synpcc7942_0687 0.39 -2.7 682,771 + Synpcc7942_0687 0.40 -1.5 682,787 + Synpcc7942_0687 0.41 -1.6 682,789 - Synpcc7942_0687 0.41 +1.0 682,795 - Synpcc7942_0687 0.41 +1.5 682,803 + Synpcc7942_0687 0.42 -1.3 682,825 + Synpcc7942_0687 0.43 +1.5 682,830 + Synpcc7942_0687 0.43 -0.0 682,838 - Synpcc7942_0687 0.44 -0.2 682,916 + Synpcc7942_0687 0.49 -1.5 682,916 + Synpcc7942_0687 0.49 -2.1 682,922 - Synpcc7942_0687 0.49 -0.0 682,924 - Synpcc7942_0687 0.49 -0.2 682,924 - Synpcc7942_0687 0.49 -1.7 682,924 - Synpcc7942_0687 0.49 +3.7 683,097 + Synpcc7942_0687 0.60 +1.3 683,105 + Synpcc7942_0687 0.60 -2.6 683,116 - Synpcc7942_0687 0.61 +1.3 683,116 - Synpcc7942_0687 0.61 -0.7 683,121 - Synpcc7942_0687 0.61 -2.3
Or see this region's nucleotide sequence