Experiment: Rifampicin 0.000625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0481 and Synpcc7942_0482 are separated by 175 nucleotides Synpcc7942_0482 and Synpcc7942_0483 are separated by 2 nucleotides Synpcc7942_0483 and Synpcc7942_0484 are separated by 212 nucleotides
Synpcc7942_0481: Synpcc7942_0481 - protease, at 465,713 to 466,828
_0481
Synpcc7942_0482: Synpcc7942_0482 - Peptidoglycan glycosyltransferase, at 467,004 to 468,773
_0482
Synpcc7942_0483: Synpcc7942_0483 - hypothetical protein, at 468,776 to 469,219
_0483
Synpcc7942_0484: Synpcc7942_0484 - hypothetical protein, at 469,432 to 470,874
_0484
Position (kb) 467
468
469 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 466.004 kb on - strand, within Synpcc7942_0481 at 466.043 kb on + strand, within Synpcc7942_0481 at 466.086 kb on - strand, within Synpcc7942_0481 at 466.147 kb on - strand, within Synpcc7942_0481 at 466.177 kb on - strand, within Synpcc7942_0481 at 466.217 kb on + strand, within Synpcc7942_0481 at 466.225 kb on - strand, within Synpcc7942_0481 at 466.228 kb on + strand, within Synpcc7942_0481 at 466.277 kb on - strand, within Synpcc7942_0481 at 466.282 kb on - strand, within Synpcc7942_0481 at 466.305 kb on - strand, within Synpcc7942_0481 at 466.318 kb on + strand, within Synpcc7942_0481 at 466.318 kb on + strand, within Synpcc7942_0481 at 466.341 kb on - strand, within Synpcc7942_0481 at 466.436 kb on + strand, within Synpcc7942_0481 at 466.626 kb on + strand, within Synpcc7942_0481 at 466.634 kb on - strand, within Synpcc7942_0481 at 466.637 kb on + strand, within Synpcc7942_0481 at 466.645 kb on - strand, within Synpcc7942_0481 at 466.715 kb on - strand, within Synpcc7942_0481 at 466.731 kb on - strand at 466.756 kb on + strand at 466.809 kb on + strand at 466.847 kb on - strand at 466.887 kb on - strand at 466.892 kb on - strand at 466.909 kb on + strand at 466.909 kb on + strand at 466.915 kb on - strand at 466.922 kb on - strand at 466.930 kb on - strand at 466.967 kb on - strand at 467.001 kb on + strand at 467.015 kb on - strand at 467.015 kb on - strand at 468.704 kb on + strand at 468.748 kb on + strand at 468.756 kb on - strand at 469.134 kb on + strand, within Synpcc7942_0483 at 469.161 kb on + strand, within Synpcc7942_0483 at 469.237 kb on + strand at 469.346 kb on + strand at 469.419 kb on + strand at 469.419 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.427 kb on - strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.430 kb on + strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.452 kb on - strand at 469.452 kb on - strand at 469.459 kb on + strand at 469.459 kb on + strand at 469.531 kb on - strand at 469.600 kb on + strand, within Synpcc7942_0484 at 469.657 kb on - strand, within Synpcc7942_0484 at 469.721 kb on + strand, within Synpcc7942_0484
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml remove 466,004 - Synpcc7942_0481 0.26 -2.1 466,043 + Synpcc7942_0481 0.30 +0.9 466,086 - Synpcc7942_0481 0.33 +0.6 466,147 - Synpcc7942_0481 0.39 +1.5 466,177 - Synpcc7942_0481 0.42 -0.5 466,217 + Synpcc7942_0481 0.45 -0.7 466,225 - Synpcc7942_0481 0.46 +5.2 466,228 + Synpcc7942_0481 0.46 +2.3 466,277 - Synpcc7942_0481 0.51 -1.1 466,282 - Synpcc7942_0481 0.51 -1.1 466,305 - Synpcc7942_0481 0.53 -2.1 466,318 + Synpcc7942_0481 0.54 -1.1 466,318 + Synpcc7942_0481 0.54 +0.9 466,341 - Synpcc7942_0481 0.56 -0.5 466,436 + Synpcc7942_0481 0.65 +2.3 466,626 + Synpcc7942_0481 0.82 +1.1 466,634 - Synpcc7942_0481 0.83 +1.3 466,637 + Synpcc7942_0481 0.83 -1.9 466,645 - Synpcc7942_0481 0.84 +4.6 466,715 - Synpcc7942_0481 0.90 +1.1 466,731 - -1.0 466,756 + -0.9 466,809 + -0.1 466,847 - +0.5 466,887 - -1.1 466,892 - -2.0 466,909 + +2.1 466,909 + +1.1 466,915 - +1.9 466,922 - -1.6 466,930 - -0.3 466,967 - +0.5 467,001 + -2.2 467,015 - +2.5 467,015 - -1.5 468,704 + +2.5 468,748 + -1.1 468,756 - -1.8 469,134 + Synpcc7942_0483 0.81 -2.3 469,161 + Synpcc7942_0483 0.87 -1.2 469,237 + -2.1 469,346 + +0.5 469,419 + -0.9 469,419 + -2.3 469,424 + +0.5 469,424 + -1.1 469,424 + -1.1 469,427 - -2.2 469,429 + -0.3 469,429 + +2.3 469,429 + -0.5 469,429 + -2.9 469,429 + -2.1 469,429 + +0.4 469,429 + +1.1 469,429 + +0.5 469,429 + -3.3 469,430 + +1.3 469,437 - +0.5 469,437 - +0.2 469,437 - -2.1 469,452 - -0.5 469,452 - +1.9 469,459 + -2.7 469,459 + -0.5 469,531 - -2.1 469,600 + Synpcc7942_0484 0.12 +2.0 469,657 - Synpcc7942_0484 0.16 -3.9 469,721 + Synpcc7942_0484 0.20 -3.4
Or see this region's nucleotide sequence