Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0421

Experiment: Rifampicin 0.000625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0420 and Synpcc7942_0421 are separated by 31 nucleotidesSynpcc7942_0421 and Synpcc7942_0422 are separated by 200 nucleotides Synpcc7942_0420: Synpcc7942_0420 - hypothetical protein, at 409,951 to 411,516 _0420 Synpcc7942_0421: Synpcc7942_0421 - hypothetical protein, at 411,548 to 411,946 _0421 Synpcc7942_0422: Synpcc7942_0422 - hypothetical protein, at 412,147 to 413,289 _0422 Position (kb) 411 412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 410.575 kb on + strand, within Synpcc7942_0420at 410.605 kb on + strand, within Synpcc7942_0420at 410.605 kb on + strand, within Synpcc7942_0420at 410.613 kb on - strand, within Synpcc7942_0420at 410.761 kb on + strand, within Synpcc7942_0420at 410.761 kb on + strand, within Synpcc7942_0420at 410.766 kb on + strand, within Synpcc7942_0420at 410.766 kb on + strand, within Synpcc7942_0420at 410.774 kb on - strand, within Synpcc7942_0420at 410.822 kb on - strand, within Synpcc7942_0420at 410.860 kb on + strand, within Synpcc7942_0420at 410.860 kb on + strand, within Synpcc7942_0420at 410.860 kb on + strand, within Synpcc7942_0420at 410.867 kb on + strand, within Synpcc7942_0420at 410.867 kb on + strand, within Synpcc7942_0420at 410.868 kb on - strand, within Synpcc7942_0420at 410.872 kb on + strand, within Synpcc7942_0420at 410.872 kb on + strand, within Synpcc7942_0420at 410.875 kb on - strand, within Synpcc7942_0420at 410.918 kb on + strand, within Synpcc7942_0420at 410.929 kb on - strand, within Synpcc7942_0420at 410.953 kb on - strand, within Synpcc7942_0420at 411.033 kb on - strand, within Synpcc7942_0420at 411.063 kb on + strand, within Synpcc7942_0420at 411.071 kb on - strand, within Synpcc7942_0420at 411.114 kb on - strand, within Synpcc7942_0420at 411.243 kb on + strand, within Synpcc7942_0420at 411.243 kb on + strand, within Synpcc7942_0420at 411.243 kb on + strand, within Synpcc7942_0420at 411.251 kb on - strand, within Synpcc7942_0420at 411.251 kb on - strand, within Synpcc7942_0420at 411.272 kb on + strand, within Synpcc7942_0420at 411.297 kb on - strand, within Synpcc7942_0420at 411.332 kb on + strand, within Synpcc7942_0420at 411.334 kb on + strand, within Synpcc7942_0420at 411.350 kb on + strand, within Synpcc7942_0420at 411.350 kb on + strand, within Synpcc7942_0420at 411.350 kb on + strand, within Synpcc7942_0420at 411.363 kb on - strandat 411.381 kb on + strandat 411.381 kb on + strandat 411.390 kb on + strandat 411.398 kb on - strandat 411.398 kb on - strandat 411.433 kb on + strandat 411.566 kb on - strandat 411.607 kb on + strand, within Synpcc7942_0421at 411.614 kb on + strand, within Synpcc7942_0421at 411.622 kb on - strand, within Synpcc7942_0421at 411.622 kb on - strand, within Synpcc7942_0421at 411.676 kb on - strand, within Synpcc7942_0421at 411.682 kb on - strand, within Synpcc7942_0421at 411.682 kb on - strand, within Synpcc7942_0421at 411.682 kb on - strand, within Synpcc7942_0421at 411.682 kb on - strand, within Synpcc7942_0421at 411.715 kb on - strand, within Synpcc7942_0421at 411.742 kb on - strand, within Synpcc7942_0421at 411.742 kb on - strand, within Synpcc7942_0421at 411.804 kb on + strand, within Synpcc7942_0421at 411.804 kb on + strand, within Synpcc7942_0421at 411.804 kb on + strand, within Synpcc7942_0421at 411.812 kb on - strand, within Synpcc7942_0421at 411.812 kb on - strand, within Synpcc7942_0421at 411.812 kb on - strand, within Synpcc7942_0421at 411.819 kb on + strand, within Synpcc7942_0421at 411.831 kb on + strand, within Synpcc7942_0421at 411.831 kb on + strand, within Synpcc7942_0421at 411.839 kb on - strand, within Synpcc7942_0421at 411.839 kb on - strand, within Synpcc7942_0421at 411.846 kb on - strand, within Synpcc7942_0421at 411.902 kb on - strand, within Synpcc7942_0421at 411.905 kb on + strand, within Synpcc7942_0421at 411.946 kb on + strandat 411.953 kb on + strandat 411.953 kb on + strandat 411.982 kb on - strandat 411.990 kb on + strandat 411.998 kb on - strandat 411.998 kb on - strandat 412.009 kb on + strandat 412.009 kb on + strandat 412.015 kb on + strandat 412.023 kb on - strandat 412.046 kb on + strandat 412.052 kb on + strandat 412.065 kb on - strandat 412.065 kb on - strandat 412.065 kb on - strandat 412.065 kb on - strandat 412.065 kb on - strandat 412.091 kb on + strandat 412.099 kb on - strandat 412.123 kb on + strandat 412.133 kb on + strandat 412.133 kb on + strandat 412.166 kb on - strandat 412.185 kb on + strandat 412.188 kb on - strandat 412.193 kb on - strandat 412.193 kb on - strandat 412.193 kb on - strandat 412.196 kb on - strandat 412.207 kb on + strandat 412.207 kb on + strandat 412.207 kb on + strandat 412.215 kb on + strandat 412.215 kb on + strandat 412.215 kb on + strandat 412.223 kb on - strandat 412.239 kb on + strandat 412.239 kb on + strandat 412.247 kb on - strandat 412.294 kb on - strand, within Synpcc7942_0422at 412.313 kb on - strand, within Synpcc7942_0422at 412.422 kb on + strand, within Synpcc7942_0422at 412.489 kb on + strand, within Synpcc7942_0422at 412.499 kb on + strand, within Synpcc7942_0422at 412.499 kb on + strand, within Synpcc7942_0422at 412.507 kb on - strand, within Synpcc7942_0422at 412.507 kb on - strand, within Synpcc7942_0422at 412.507 kb on - strand, within Synpcc7942_0422at 412.514 kb on + strand, within Synpcc7942_0422at 412.522 kb on + strand, within Synpcc7942_0422at 412.562 kb on + strand, within Synpcc7942_0422at 412.567 kb on - strand, within Synpcc7942_0422at 412.569 kb on + strand, within Synpcc7942_0422at 412.576 kb on - strand, within Synpcc7942_0422at 412.594 kb on + strand, within Synpcc7942_0422at 412.647 kb on + strand, within Synpcc7942_0422at 412.655 kb on + strand, within Synpcc7942_0422at 412.702 kb on + strand, within Synpcc7942_0422at 412.710 kb on + strand, within Synpcc7942_0422at 412.740 kb on - strandat 412.750 kb on - strand, within Synpcc7942_0422at 412.755 kb on - strand, within Synpcc7942_0422at 412.761 kb on - strand, within Synpcc7942_0422at 412.774 kb on - strand, within Synpcc7942_0422at 412.790 kb on + strand, within Synpcc7942_0422at 412.790 kb on + strand, within Synpcc7942_0422at 412.790 kb on + strand, within Synpcc7942_0422at 412.790 kb on + strand, within Synpcc7942_0422at 412.791 kb on - strand, within Synpcc7942_0422at 412.791 kb on - strand, within Synpcc7942_0422at 412.798 kb on - strand, within Synpcc7942_0422at 412.798 kb on - strand, within Synpcc7942_0422at 412.839 kb on - strand, within Synpcc7942_0422at 412.860 kb on - strand, within Synpcc7942_0422at 412.863 kb on - strand, within Synpcc7942_0422at 412.893 kb on - strand, within Synpcc7942_0422at 412.918 kb on - strand, within Synpcc7942_0422at 412.945 kb on + strand, within Synpcc7942_0422

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml
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410,575 + Synpcc7942_0420 0.40 +0.6
410,605 + Synpcc7942_0420 0.42 +0.4
410,605 + Synpcc7942_0420 0.42 -2.9
410,613 - Synpcc7942_0420 0.42 -0.6
410,761 + Synpcc7942_0420 0.52 +0.0
410,761 + Synpcc7942_0420 0.52 -1.6
410,766 + Synpcc7942_0420 0.52 -1.2
410,766 + Synpcc7942_0420 0.52 -1.1
410,774 - Synpcc7942_0420 0.53 +1.7
410,822 - Synpcc7942_0420 0.56 +1.3
410,860 + Synpcc7942_0420 0.58 +1.4
410,860 + Synpcc7942_0420 0.58 +0.8
410,860 + Synpcc7942_0420 0.58 -0.8
410,867 + Synpcc7942_0420 0.58 -2.2
410,867 + Synpcc7942_0420 0.58 -2.0
410,868 - Synpcc7942_0420 0.59 -0.3
410,872 + Synpcc7942_0420 0.59 -0.6
410,872 + Synpcc7942_0420 0.59 -1.6
410,875 - Synpcc7942_0420 0.59 -0.6
410,918 + Synpcc7942_0420 0.62 -0.7
410,929 - Synpcc7942_0420 0.62 -1.3
410,953 - Synpcc7942_0420 0.64 +1.4
411,033 - Synpcc7942_0420 0.69 -2.6
411,063 + Synpcc7942_0420 0.71 -1.4
411,071 - Synpcc7942_0420 0.72 -2.4
411,114 - Synpcc7942_0420 0.74 -2.9
411,243 + Synpcc7942_0420 0.83 +0.4
411,243 + Synpcc7942_0420 0.83 -2.9
411,243 + Synpcc7942_0420 0.83 -0.7
411,251 - Synpcc7942_0420 0.83 -2.2
411,251 - Synpcc7942_0420 0.83 -1.6
411,272 + Synpcc7942_0420 0.84 -1.3
411,297 - Synpcc7942_0420 0.86 -1.7
411,332 + Synpcc7942_0420 0.88 +1.8
411,334 + Synpcc7942_0420 0.88 -0.6
411,350 + Synpcc7942_0420 0.89 -2.6
411,350 + Synpcc7942_0420 0.89 +2.2
411,350 + Synpcc7942_0420 0.89 -2.2
411,363 - -3.0
411,381 + -2.8
411,381 + +1.6
411,390 + +0.7
411,398 - -3.7
411,398 - -1.2
411,433 + +0.4
411,566 - +0.2
411,607 + Synpcc7942_0421 0.15 +2.1
411,614 + Synpcc7942_0421 0.17 -1.6
411,622 - Synpcc7942_0421 0.19 -0.2
411,622 - Synpcc7942_0421 0.19 +0.4
411,676 - Synpcc7942_0421 0.32 +1.7
411,682 - Synpcc7942_0421 0.34 -3.5
411,682 - Synpcc7942_0421 0.34 -1.2
411,682 - Synpcc7942_0421 0.34 -1.4
411,682 - Synpcc7942_0421 0.34 -0.9
411,715 - Synpcc7942_0421 0.42 -1.2
411,742 - Synpcc7942_0421 0.49 -1.2
411,742 - Synpcc7942_0421 0.49 -4.5
411,804 + Synpcc7942_0421 0.64 -3.0
411,804 + Synpcc7942_0421 0.64 -1.2
411,804 + Synpcc7942_0421 0.64 -2.2
411,812 - Synpcc7942_0421 0.66 +1.4
411,812 - Synpcc7942_0421 0.66 +1.0
411,812 - Synpcc7942_0421 0.66 +0.5
411,819 + Synpcc7942_0421 0.68 -1.6
411,831 + Synpcc7942_0421 0.71 -1.3
411,831 + Synpcc7942_0421 0.71 -2.4
411,839 - Synpcc7942_0421 0.73 +2.0
411,839 - Synpcc7942_0421 0.73 -2.8
411,846 - Synpcc7942_0421 0.75 +0.1
411,902 - Synpcc7942_0421 0.89 -1.6
411,905 + Synpcc7942_0421 0.89 -3.2
411,946 + +1.1
411,953 + +1.9
411,953 + +0.9
411,982 - -0.8
411,990 + +1.4
411,998 - +1.5
411,998 - +1.9
412,009 + -2.2
412,009 + -0.2
412,015 + -0.7
412,023 - +0.3
412,046 + +1.0
412,052 + +0.4
412,065 - +1.1
412,065 - +1.6
412,065 - -1.9
412,065 - +1.6
412,065 - -0.6
412,091 + +0.9
412,099 - -0.6
412,123 + +0.7
412,133 + +0.3
412,133 + -0.1
412,166 - -3.5
412,185 + +0.2
412,188 - +1.6
412,193 - -3.2
412,193 - -0.7
412,193 - +1.4
412,196 - +0.9
412,207 + -1.6
412,207 + +2.0
412,207 + +0.0
412,215 + +1.9
412,215 + +0.3
412,215 + +2.7
412,223 - +2.0
412,239 + -1.4
412,239 + +0.0
412,247 - +1.7
412,294 - Synpcc7942_0422 0.13 +0.8
412,313 - Synpcc7942_0422 0.15 -0.7
412,422 + Synpcc7942_0422 0.24 +2.4
412,489 + Synpcc7942_0422 0.30 +1.0
412,499 + Synpcc7942_0422 0.31 -0.6
412,499 + Synpcc7942_0422 0.31 +1.5
412,507 - Synpcc7942_0422 0.31 +1.0
412,507 - Synpcc7942_0422 0.31 -1.2
412,507 - Synpcc7942_0422 0.31 -1.2
412,514 + Synpcc7942_0422 0.32 -1.2
412,522 + Synpcc7942_0422 0.33 +1.9
412,562 + Synpcc7942_0422 0.36 -2.2
412,567 - Synpcc7942_0422 0.37 +2.5
412,569 + Synpcc7942_0422 0.37 +0.7
412,576 - Synpcc7942_0422 0.38 -0.2
412,594 + Synpcc7942_0422 0.39 -0.4
412,647 + Synpcc7942_0422 0.44 -2.9
412,655 + Synpcc7942_0422 0.44 -1.6
412,702 + Synpcc7942_0422 0.49 +0.9
412,710 + Synpcc7942_0422 0.49 -1.2
412,740 - +1.4
412,750 - Synpcc7942_0422 0.53 +0.4
412,755 - Synpcc7942_0422 0.53 -0.6
412,761 - Synpcc7942_0422 0.54 -0.6
412,774 - Synpcc7942_0422 0.55 -0.8
412,790 + Synpcc7942_0422 0.56 +0.4
412,790 + Synpcc7942_0422 0.56 +2.3
412,790 + Synpcc7942_0422 0.56 -1.2
412,790 + Synpcc7942_0422 0.56 -0.3
412,791 - Synpcc7942_0422 0.56 -1.3
412,791 - Synpcc7942_0422 0.56 +1.7
412,798 - Synpcc7942_0422 0.57 -0.2
412,798 - Synpcc7942_0422 0.57 -0.9
412,839 - Synpcc7942_0422 0.61 +0.6
412,860 - Synpcc7942_0422 0.62 +1.7
412,863 - Synpcc7942_0422 0.63 +0.4
412,893 - Synpcc7942_0422 0.65 -3.0
412,918 - Synpcc7942_0422 0.67 -0.9
412,945 + Synpcc7942_0422 0.70 +1.4

Or see this region's nucleotide sequence