Experiment: Rifampicin 0.000625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atpC and petF are separated by 108 nucleotides petF and Synpcc7942_0339 are separated by 160 nucleotides
Synpcc7942_0337: atpC - F0F1 ATP synthase subunit gamma, at 332,458 to 333,408
atpC
Synpcc7942_0338: petF - Ferredoxin (2Fe-2S), at 333,517 to 333,834
petF
Synpcc7942_0339: Synpcc7942_0339 - hypothetical protein, at 333,995 to 335,074
_0339
Position (kb) 333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 333.461 kb on - strand at 333.469 kb on - strand at 333.555 kb on + strand, within petF at 333.564 kb on + strand, within petF at 333.564 kb on - strand, within petF at 333.597 kb on - strand, within petF at 333.601 kb on + strand, within petF at 333.640 kb on + strand, within petF at 333.645 kb on + strand, within petF at 333.656 kb on - strand, within petF at 333.662 kb on - strand, within petF at 333.708 kb on + strand, within petF at 333.713 kb on + strand, within petF at 333.727 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.740 kb on + strand, within petF at 333.740 kb on - strand, within petF at 333.741 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.756 kb on - strand, within petF at 333.757 kb on - strand, within petF at 333.801 kb on + strand, within petF at 333.810 kb on - strand at 333.829 kb on + strand at 333.843 kb on + strand at 333.857 kb on + strand at 333.866 kb on - strand at 333.917 kb on - strand at 333.961 kb on + strand at 333.991 kb on + strand at 333.991 kb on + strand at 333.999 kb on - strand at 333.999 kb on - strand at 334.003 kb on - strand at 334.007 kb on + strand at 334.007 kb on + strand at 334.015 kb on - strand at 334.105 kb on - strand, within Synpcc7942_0339 at 334.153 kb on + strand, within Synpcc7942_0339 at 334.375 kb on + strand, within Synpcc7942_0339 at 334.429 kb on + strand, within Synpcc7942_0339 at 334.468 kb on + strand, within Synpcc7942_0339 at 334.547 kb on + strand, within Synpcc7942_0339 at 334.758 kb on + strand, within Synpcc7942_0339 at 334.765 kb on + strand, within Synpcc7942_0339 at 334.790 kb on + strand, within Synpcc7942_0339 at 334.821 kb on - strand, within Synpcc7942_0339
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml remove 333,461 - -1.6 333,469 - +0.6 333,555 + petF Synpcc7942_0338 0.12 +2.2 333,564 + petF Synpcc7942_0338 0.15 -0.8 333,564 - petF Synpcc7942_0338 0.15 -3.1 333,597 - petF Synpcc7942_0338 0.25 +0.4 333,601 + petF Synpcc7942_0338 0.26 -1.6 333,640 + petF Synpcc7942_0338 0.39 -1.7 333,645 + petF Synpcc7942_0338 0.40 -2.4 333,656 - petF Synpcc7942_0338 0.44 -0.3 333,662 - petF Synpcc7942_0338 0.46 -1.2 333,708 + petF Synpcc7942_0338 0.60 -1.2 333,713 + petF Synpcc7942_0338 0.62 +0.0 333,727 + petF Synpcc7942_0338 0.66 -1.9 333,739 + petF Synpcc7942_0338 0.70 -1.2 333,739 + petF Synpcc7942_0338 0.70 -0.9 333,739 + petF Synpcc7942_0338 0.70 +0.3 333,739 + petF Synpcc7942_0338 0.70 -0.6 333,739 + petF Synpcc7942_0338 0.70 +1.5 333,740 + petF Synpcc7942_0338 0.70 -1.6 333,740 - petF Synpcc7942_0338 0.70 -0.6 333,741 - petF Synpcc7942_0338 0.70 -2.1 333,747 - petF Synpcc7942_0338 0.72 +1.6 333,747 - petF Synpcc7942_0338 0.72 +2.4 333,747 - petF Synpcc7942_0338 0.72 -1.6 333,747 - petF Synpcc7942_0338 0.72 -2.6 333,747 - petF Synpcc7942_0338 0.72 +0.4 333,747 - petF Synpcc7942_0338 0.72 -3.2 333,756 - petF Synpcc7942_0338 0.75 -2.2 333,757 - petF Synpcc7942_0338 0.75 -1.2 333,801 + petF Synpcc7942_0338 0.89 -2.8 333,810 - -0.6 333,829 + -0.6 333,843 + +0.1 333,857 + -1.6 333,866 - +0.6 333,917 - -1.6 333,961 + -2.6 333,991 + +0.1 333,991 + -1.6 333,999 - +1.3 333,999 - +0.6 334,003 - +1.9 334,007 + +0.4 334,007 + +1.2 334,015 - -0.9 334,105 - Synpcc7942_0339 0.10 +0.4 334,153 + Synpcc7942_0339 0.15 -1.8 334,375 + Synpcc7942_0339 0.35 -1.9 334,429 + Synpcc7942_0339 0.40 -1.6 334,468 + Synpcc7942_0339 0.44 -0.9 334,547 + Synpcc7942_0339 0.51 -3.2 334,758 + Synpcc7942_0339 0.71 -3.4 334,765 + Synpcc7942_0339 0.71 -0.2 334,790 + Synpcc7942_0339 0.74 -1.9 334,821 - Synpcc7942_0339 0.76 -2.3
Or see this region's nucleotide sequence