Experiment: Rifampicin 0.000625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0305 and chlP overlap by 7 nucleotides chlP and napA are separated by 362 nucleotides napA and chpX are separated by 32 nucleotides
Synpcc7942_0305: Synpcc7942_0305 - hypothetical protein, at 303,815 to 304,045
_0305
Synpcc7942_0306: chlP - hypothetical protein, at 304,039 to 304,347
chlP
Synpcc7942_0307: napA - Na+/H+ antiporter, at 304,710 to 305,936
napA
Synpcc7942_0308: chpX - CO2 hydration protein, at 305,969 to 307,108
chpX
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 303.765 kb on + strand at 303.765 kb on + strand at 303.777 kb on + strand at 303.810 kb on + strand at 303.856 kb on + strand, within Synpcc7942_0305 at 303.856 kb on + strand, within Synpcc7942_0305 at 303.864 kb on - strand, within Synpcc7942_0305 at 303.864 kb on - strand, within Synpcc7942_0305 at 303.883 kb on + strand, within Synpcc7942_0305 at 303.924 kb on - strand, within Synpcc7942_0305 at 304.053 kb on + strand at 304.194 kb on - strand, within chlP at 304.227 kb on + strand, within chlP at 304.237 kb on + strand, within chlP at 304.237 kb on + strand, within chlP at 304.245 kb on - strand, within chlP at 304.245 kb on - strand, within chlP at 304.279 kb on + strand, within chlP at 304.279 kb on + strand, within chlP at 304.287 kb on - strand, within chlP at 304.287 kb on - strand, within chlP at 304.287 kb on - strand, within chlP at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.333 kb on + strand at 304.333 kb on - strand at 304.333 kb on - strand at 304.377 kb on + strand at 304.377 kb on + strand at 304.388 kb on + strand at 304.415 kb on - strand at 304.415 kb on - strand at 304.427 kb on + strand at 304.427 kb on + strand at 304.440 kb on + strand at 304.458 kb on + strand at 304.459 kb on + strand at 304.466 kb on - strand at 304.466 kb on - strand at 304.481 kb on + strand at 304.489 kb on - strand at 304.489 kb on - strand at 304.489 kb on - strand at 304.499 kb on - strand at 304.504 kb on + strand at 304.531 kb on + strand at 304.531 kb on + strand at 304.531 kb on + strand at 304.546 kb on - strand at 304.554 kb on - strand at 304.586 kb on + strand at 304.591 kb on - strand at 304.608 kb on - strand at 304.608 kb on - strand at 304.624 kb on - strand at 304.642 kb on - strand at 304.685 kb on - strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.704 kb on - strand at 304.709 kb on - strand at 304.710 kb on - strand at 304.730 kb on - strand at 304.759 kb on + strand at 304.759 kb on + strand at 304.767 kb on - strand at 304.767 kb on - strand at 304.790 kb on + strand at 304.790 kb on + strand at 304.798 kb on - strand at 304.798 kb on - strand at 304.817 kb on + strand at 304.825 kb on - strand at 304.875 kb on + strand, within napA at 304.875 kb on + strand, within napA at 304.875 kb on + strand, within napA at 304.888 kb on - strand, within napA at 304.919 kb on + strand, within napA at 304.947 kb on + strand, within napA at 304.947 kb on + strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.966 kb on - strand, within napA at 304.970 kb on - strand, within napA at 305.040 kb on + strand, within napA at 305.040 kb on + strand, within napA at 305.040 kb on + strand, within napA at 305.048 kb on - strand, within napA at 305.048 kb on - strand, within napA at 305.065 kb on + strand, within napA at 305.073 kb on - strand, within napA at 305.075 kb on - strand, within napA at 305.078 kb on + strand at 305.085 kb on - strand, within napA at 305.108 kb on - strand, within napA at 305.177 kb on + strand, within napA at 305.199 kb on - strand, within napA at 305.205 kb on + strand, within napA at 305.227 kb on + strand, within napA at 305.247 kb on + strand, within napA at 305.267 kb on - strand, within napA at 305.291 kb on - strand at 305.326 kb on - strand, within napA at 305.328 kb on + strand, within napA at 305.333 kb on + strand, within napA at 305.333 kb on + strand, within napA at 305.341 kb on - strand, within napA at 305.341 kb on - strand, within napA at 305.374 kb on - strand at 305.393 kb on + strand, within napA at 305.418 kb on - strand, within napA at 305.421 kb on + strand, within napA at 305.461 kb on + strand, within napA at 305.506 kb on - strand, within napA at 305.523 kb on + strand, within napA at 305.523 kb on + strand, within napA at 305.525 kb on - strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on - strand, within napA at 305.539 kb on - strand, within napA at 305.539 kb on - strand, within napA at 305.565 kb on + strand, within napA at 305.571 kb on + strand at 305.571 kb on + strand, within napA at 305.668 kb on + strand, within napA at 305.668 kb on + strand, within napA at 305.678 kb on + strand, within napA at 305.718 kb on + strand, within napA at 305.721 kb on - strand, within napA at 305.744 kb on - strand, within napA at 305.752 kb on - strand, within napA at 305.778 kb on - strand, within napA at 305.788 kb on - strand, within napA at 305.788 kb on - strand, within napA at 305.788 kb on - strand, within napA at 305.792 kb on + strand, within napA at 305.831 kb on + strand at 305.839 kb on - strand at 305.839 kb on - strand at 305.852 kb on - strand at 305.852 kb on - strand at 305.852 kb on - strand at 305.877 kb on + strand at 305.880 kb on - strand at 305.933 kb on + strand at 305.939 kb on - strand at 305.953 kb on - strand at 305.960 kb on + strand at 305.971 kb on + strand at 306.003 kb on + strand at 306.003 kb on + strand at 306.006 kb on - strand at 306.011 kb on - strand at 306.011 kb on - strand at 306.018 kb on + strand at 306.032 kb on - strand at 306.061 kb on + strand at 306.093 kb on - strand, within chpX at 306.165 kb on + strand, within chpX at 306.186 kb on + strand, within chpX at 306.227 kb on + strand, within chpX at 306.227 kb on + strand, within chpX at 306.264 kb on + strand, within chpX at 306.342 kb on + strand, within chpX at 306.352 kb on - strand, within chpX at 306.377 kb on + strand, within chpX at 306.398 kb on + strand, within chpX at 306.398 kb on + strand, within chpX at 306.400 kb on - strand, within chpX at 306.412 kb on + strand, within chpX at 306.597 kb on - strand, within chpX at 306.606 kb on + strand, within chpX at 306.616 kb on + strand, within chpX at 306.629 kb on + strand, within chpX at 306.637 kb on - strand, within chpX at 306.637 kb on - strand, within chpX at 306.675 kb on + strand, within chpX at 306.687 kb on + strand, within chpX at 306.691 kb on + strand, within chpX at 306.748 kb on + strand, within chpX at 306.804 kb on + strand, within chpX at 306.819 kb on - strand, within chpX at 306.832 kb on - strand, within chpX at 306.862 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml remove 303,765 + -0.5 303,765 + +0.8 303,777 + +0.9 303,810 + +2.5 303,856 + Synpcc7942_0305 0.18 -2.6 303,856 + Synpcc7942_0305 0.18 +0.4 303,864 - Synpcc7942_0305 0.21 +2.5 303,864 - Synpcc7942_0305 0.21 -0.2 303,883 + Synpcc7942_0305 0.29 -2.2 303,924 - Synpcc7942_0305 0.47 -1.2 304,053 + -0.9 304,194 - chlP Synpcc7942_0306 0.50 -0.1 304,227 + chlP Synpcc7942_0306 0.61 +1.1 304,237 + chlP Synpcc7942_0306 0.64 -1.6 304,237 + chlP Synpcc7942_0306 0.64 +2.2 304,245 - chlP Synpcc7942_0306 0.67 +1.2 304,245 - chlP Synpcc7942_0306 0.67 -0.9 304,279 + chlP Synpcc7942_0306 0.78 -2.2 304,279 + chlP Synpcc7942_0306 0.78 +0.0 304,287 - chlP Synpcc7942_0306 0.80 +0.6 304,287 - chlP Synpcc7942_0306 0.80 +1.3 304,287 - chlP Synpcc7942_0306 0.80 -1.2 304,325 + -1.9 304,325 + -0.6 304,325 + +0.6 304,325 + +0.4 304,325 + +0.4 304,325 + -2.2 304,325 + +0.0 304,325 + +0.3 304,333 + -1.2 304,333 - +2.4 304,333 - -1.2 304,377 + -1.9 304,377 + -0.6 304,388 + -2.9 304,415 - -0.6 304,415 - +1.4 304,427 + -1.6 304,427 + +2.1 304,440 + +3.9 304,458 + -0.6 304,459 + +2.7 304,466 - -0.4 304,466 - +3.0 304,481 + +0.0 304,489 - +1.5 304,489 - +2.4 304,489 - +1.1 304,499 - -1.0 304,504 + +2.0 304,531 + +0.2 304,531 + +1.2 304,531 + +0.9 304,546 - +1.4 304,554 - -2.6 304,586 + -1.9 304,591 - -1.2 304,608 - -2.9 304,608 - -1.4 304,624 - +0.4 304,642 - +0.2 304,685 - -0.9 304,686 + +3.1 304,686 + -0.6 304,686 + +0.0 304,686 + -3.3 304,694 - +0.7 304,694 - +0.4 304,694 - -0.2 304,694 - +0.2 304,694 - +1.2 304,704 - -2.6 304,709 - +0.9 304,710 - -1.6 304,730 - -0.4 304,759 + -0.5 304,759 + -0.1 304,767 - -1.8 304,767 - +1.7 304,790 + -1.8 304,790 + -0.6 304,798 - +0.1 304,798 - -0.6 304,817 + -1.3 304,825 - +1.4 304,875 + napA Synpcc7942_0307 0.13 +1.4 304,875 + napA Synpcc7942_0307 0.13 -1.2 304,875 + napA Synpcc7942_0307 0.13 -1.2 304,888 - napA Synpcc7942_0307 0.15 +0.4 304,919 + napA Synpcc7942_0307 0.17 -2.6 304,947 + napA Synpcc7942_0307 0.19 -2.3 304,947 + napA Synpcc7942_0307 0.19 -1.6 304,955 - napA Synpcc7942_0307 0.20 -1.9 304,955 - napA Synpcc7942_0307 0.20 +2.1 304,955 - napA Synpcc7942_0307 0.20 -1.2 304,955 - napA Synpcc7942_0307 0.20 -0.1 304,955 - napA Synpcc7942_0307 0.20 -0.4 304,955 - napA Synpcc7942_0307 0.20 +1.3 304,966 - napA Synpcc7942_0307 0.21 -0.6 304,970 - napA Synpcc7942_0307 0.21 -2.9 305,040 + napA Synpcc7942_0307 0.27 -3.1 305,040 + napA Synpcc7942_0307 0.27 +0.4 305,040 + napA Synpcc7942_0307 0.27 -0.6 305,048 - napA Synpcc7942_0307 0.28 -0.2 305,048 - napA Synpcc7942_0307 0.28 +0.2 305,065 + napA Synpcc7942_0307 0.29 -1.2 305,073 - napA Synpcc7942_0307 0.30 -1.8 305,075 - napA Synpcc7942_0307 0.30 -0.3 305,078 + +0.4 305,085 - napA Synpcc7942_0307 0.31 -2.6 305,108 - napA Synpcc7942_0307 0.32 +0.1 305,177 + napA Synpcc7942_0307 0.38 -1.9 305,199 - napA Synpcc7942_0307 0.40 -0.5 305,205 + napA Synpcc7942_0307 0.40 +1.7 305,227 + napA Synpcc7942_0307 0.42 -1.2 305,247 + napA Synpcc7942_0307 0.44 +0.0 305,267 - napA Synpcc7942_0307 0.45 -1.2 305,291 - -0.6 305,326 - napA Synpcc7942_0307 0.50 -1.8 305,328 + napA Synpcc7942_0307 0.50 -2.1 305,333 + napA Synpcc7942_0307 0.51 -1.5 305,333 + napA Synpcc7942_0307 0.51 -1.4 305,341 - napA Synpcc7942_0307 0.51 -0.3 305,341 - napA Synpcc7942_0307 0.51 +1.7 305,374 - +0.4 305,393 + napA Synpcc7942_0307 0.56 -1.5 305,418 - napA Synpcc7942_0307 0.58 +0.5 305,421 + napA Synpcc7942_0307 0.58 +0.4 305,461 + napA Synpcc7942_0307 0.61 +0.4 305,506 - napA Synpcc7942_0307 0.65 -1.3 305,523 + napA Synpcc7942_0307 0.66 -0.4 305,523 + napA Synpcc7942_0307 0.66 -1.6 305,525 - napA Synpcc7942_0307 0.66 -1.1 305,531 + napA Synpcc7942_0307 0.67 +2.7 305,531 + napA Synpcc7942_0307 0.67 -1.6 305,531 + napA Synpcc7942_0307 0.67 -1.6 305,531 + napA Synpcc7942_0307 0.67 -0.6 305,531 + napA Synpcc7942_0307 0.67 +0.5 305,531 + napA Synpcc7942_0307 0.67 +0.4 305,531 - napA Synpcc7942_0307 0.67 +1.1 305,539 - napA Synpcc7942_0307 0.68 -2.4 305,539 - napA Synpcc7942_0307 0.68 +1.9 305,565 + napA Synpcc7942_0307 0.70 -2.2 305,571 + +0.4 305,571 + napA Synpcc7942_0307 0.70 -1.2 305,668 + napA Synpcc7942_0307 0.78 +0.6 305,668 + napA Synpcc7942_0307 0.78 +0.4 305,678 + napA Synpcc7942_0307 0.79 -0.9 305,718 + napA Synpcc7942_0307 0.82 +2.1 305,721 - napA Synpcc7942_0307 0.82 -1.9 305,744 - napA Synpcc7942_0307 0.84 -1.2 305,752 - napA Synpcc7942_0307 0.85 +2.0 305,778 - napA Synpcc7942_0307 0.87 +0.4 305,788 - napA Synpcc7942_0307 0.88 -0.6 305,788 - napA Synpcc7942_0307 0.88 +1.4 305,788 - napA Synpcc7942_0307 0.88 +0.4 305,792 + napA Synpcc7942_0307 0.88 -0.7 305,831 + +0.4 305,839 - -0.9 305,839 - -1.1 305,852 - -0.7 305,852 - -0.9 305,852 - +3.1 305,877 + +2.3 305,880 - +0.4 305,933 + -3.7 305,939 - +0.1 305,953 - -1.2 305,960 + +1.4 305,971 + -0.5 306,003 + +1.6 306,003 + -3.2 306,006 - -1.2 306,011 - -1.9 306,011 - -1.6 306,018 + -2.6 306,032 - +0.4 306,061 + -0.1 306,093 - chpX Synpcc7942_0308 0.11 -1.2 306,165 + chpX Synpcc7942_0308 0.17 -1.9 306,186 + chpX Synpcc7942_0308 0.19 +2.0 306,227 + chpX Synpcc7942_0308 0.23 -0.0 306,227 + chpX Synpcc7942_0308 0.23 -0.5 306,264 + chpX Synpcc7942_0308 0.26 -1.9 306,342 + chpX Synpcc7942_0308 0.33 +1.4 306,352 - chpX Synpcc7942_0308 0.34 +2.2 306,377 + chpX Synpcc7942_0308 0.36 -0.3 306,398 + chpX Synpcc7942_0308 0.38 -0.6 306,398 + chpX Synpcc7942_0308 0.38 +0.4 306,400 - chpX Synpcc7942_0308 0.38 +1.4 306,412 + chpX Synpcc7942_0308 0.39 +0.4 306,597 - chpX Synpcc7942_0308 0.55 -0.6 306,606 + chpX Synpcc7942_0308 0.56 +1.0 306,616 + chpX Synpcc7942_0308 0.57 -1.2 306,629 + chpX Synpcc7942_0308 0.58 -0.9 306,637 - chpX Synpcc7942_0308 0.59 +0.9 306,637 - chpX Synpcc7942_0308 0.59 +1.2 306,675 + chpX Synpcc7942_0308 0.62 -1.9 306,687 + chpX Synpcc7942_0308 0.63 -1.2 306,691 + chpX Synpcc7942_0308 0.63 -1.6 306,748 + chpX Synpcc7942_0308 0.68 +0.6 306,804 + chpX Synpcc7942_0308 0.73 +1.4 306,819 - chpX Synpcc7942_0308 0.75 -1.2 306,832 - chpX Synpcc7942_0308 0.76 -2.4 306,862 + +0.4
Or see this region's nucleotide sequence