Experiment: Rifampicin 0.000625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0162 and Synpcc7942_0163 are separated by 5 nucleotides Synpcc7942_0163 and Synpcc7942_0164 are separated by 37 nucleotides Synpcc7942_0164 and ycf36 are separated by 18 nucleotides ycf36 and Synpcc7942_0166 overlap by 4 nucleotides
Synpcc7942_0162: Synpcc7942_0162 - hypothetical protein, at 163,405 to 163,755
_0162
Synpcc7942_0163: Synpcc7942_0163 - hypothetical protein, at 163,761 to 164,510
_0163
Synpcc7942_0164: Synpcc7942_0164 - Iojap-related protein, at 164,548 to 164,967
_0164
Synpcc7942_0165: ycf36 - hypothetical protein, at 164,986 to 165,486
ycf36
Synpcc7942_0166: Synpcc7942_0166 - hypothetical protein, at 165,483 to 166,436
_0166
Position (kb) 164
165 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 163.572 kb on - strand, within Synpcc7942_0162 at 163.578 kb on + strand, within Synpcc7942_0162 at 163.578 kb on + strand, within Synpcc7942_0162 at 163.581 kb on - strand, within Synpcc7942_0162 at 163.583 kb on + strand at 163.591 kb on - strand, within Synpcc7942_0162 at 163.617 kb on + strand, within Synpcc7942_0162 at 163.653 kb on + strand, within Synpcc7942_0162 at 163.668 kb on - strand, within Synpcc7942_0162 at 163.673 kb on + strand, within Synpcc7942_0162 at 163.681 kb on - strand, within Synpcc7942_0162 at 163.681 kb on - strand, within Synpcc7942_0162 at 163.681 kb on - strand, within Synpcc7942_0162 at 163.683 kb on + strand, within Synpcc7942_0162 at 163.686 kb on - strand, within Synpcc7942_0162 at 163.687 kb on - strand, within Synpcc7942_0162 at 163.702 kb on + strand, within Synpcc7942_0162 at 163.707 kb on - strand, within Synpcc7942_0162 at 163.721 kb on + strand at 163.741 kb on - strand at 163.749 kb on + strand at 163.757 kb on - strand at 163.807 kb on + strand at 163.858 kb on - strand, within Synpcc7942_0163 at 163.860 kb on - strand, within Synpcc7942_0163 at 163.871 kb on + strand, within Synpcc7942_0163 at 163.871 kb on + strand, within Synpcc7942_0163 at 163.871 kb on + strand, within Synpcc7942_0163 at 163.876 kb on + strand, within Synpcc7942_0163 at 163.879 kb on - strand, within Synpcc7942_0163 at 163.879 kb on - strand, within Synpcc7942_0163 at 163.879 kb on - strand, within Synpcc7942_0163 at 163.897 kb on + strand, within Synpcc7942_0163 at 163.897 kb on + strand, within Synpcc7942_0163 at 163.905 kb on - strand, within Synpcc7942_0163 at 163.905 kb on - strand, within Synpcc7942_0163 at 163.922 kb on - strand, within Synpcc7942_0163 at 163.923 kb on - strand, within Synpcc7942_0163 at 163.923 kb on - strand, within Synpcc7942_0163 at 163.929 kb on + strand at 163.934 kb on + strand, within Synpcc7942_0163 at 163.968 kb on + strand, within Synpcc7942_0163 at 164.028 kb on - strand, within Synpcc7942_0163 at 164.050 kb on + strand, within Synpcc7942_0163 at 164.052 kb on + strand, within Synpcc7942_0163 at 164.069 kb on + strand, within Synpcc7942_0163 at 164.076 kb on - strand, within Synpcc7942_0163 at 164.085 kb on + strand, within Synpcc7942_0163 at 164.085 kb on + strand, within Synpcc7942_0163 at 164.085 kb on + strand, within Synpcc7942_0163 at 164.097 kb on + strand, within Synpcc7942_0163 at 164.097 kb on + strand, within Synpcc7942_0163 at 164.097 kb on + strand, within Synpcc7942_0163 at 164.105 kb on - strand, within Synpcc7942_0163 at 164.121 kb on + strand, within Synpcc7942_0163 at 164.148 kb on + strand, within Synpcc7942_0163 at 164.148 kb on + strand, within Synpcc7942_0163 at 164.153 kb on - strand, within Synpcc7942_0163 at 164.219 kb on + strand, within Synpcc7942_0163 at 164.227 kb on + strand, within Synpcc7942_0163 at 164.236 kb on + strand, within Synpcc7942_0163 at 164.298 kb on + strand, within Synpcc7942_0163 at 164.298 kb on + strand, within Synpcc7942_0163 at 164.305 kb on + strand, within Synpcc7942_0163 at 164.306 kb on - strand, within Synpcc7942_0163 at 164.344 kb on + strand, within Synpcc7942_0163 at 164.385 kb on - strand, within Synpcc7942_0163 at 164.390 kb on + strand, within Synpcc7942_0163 at 164.418 kb on + strand, within Synpcc7942_0163 at 164.426 kb on - strand, within Synpcc7942_0163 at 164.476 kb on + strand at 164.484 kb on - strand at 164.497 kb on - strand at 164.499 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.510 kb on + strand at 164.513 kb on - strand at 164.517 kb on + strand at 164.525 kb on - strand at 164.551 kb on + strand at 164.551 kb on + strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.598 kb on + strand, within Synpcc7942_0164 at 164.598 kb on + strand, within Synpcc7942_0164 at 164.601 kb on - strand, within Synpcc7942_0164 at 164.607 kb on - strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.676 kb on + strand, within Synpcc7942_0164 at 164.795 kb on + strand, within Synpcc7942_0164 at 164.803 kb on - strand, within Synpcc7942_0164 at 164.816 kb on + strand, within Synpcc7942_0164 at 164.824 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand at 164.832 kb on - strand, within Synpcc7942_0164 at 164.914 kb on - strand, within Synpcc7942_0164 at 164.939 kb on + strand at 164.954 kb on + strand at 164.994 kb on + strand at 165.029 kb on - strand at 165.035 kb on + strand at 165.051 kb on - strand, within ycf36 at 165.069 kb on + strand, within ycf36 at 165.072 kb on - strand, within ycf36 at 165.090 kb on - strand at 165.090 kb on - strand, within ycf36 at 165.093 kb on + strand, within ycf36 at 165.096 kb on - strand, within ycf36 at 165.098 kb on + strand, within ycf36 at 165.100 kb on - strand, within ycf36 at 165.105 kb on + strand, within ycf36 at 165.113 kb on + strand, within ycf36 at 165.113 kb on - strand, within ycf36 at 165.118 kb on + strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.137 kb on - strand, within ycf36 at 165.142 kb on - strand, within ycf36 at 165.178 kb on + strand, within ycf36 at 165.179 kb on + strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.195 kb on + strand, within ycf36 at 165.209 kb on + strand, within ycf36 at 165.254 kb on - strand, within ycf36 at 165.288 kb on + strand, within ycf36 at 165.296 kb on - strand, within ycf36 at 165.312 kb on - strand, within ycf36 at 165.367 kb on + strand, within ycf36 at 165.452 kb on - strand at 165.468 kb on + strand at 165.508 kb on - strand at 165.593 kb on - strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.618 kb on + strand, within Synpcc7942_0166 at 165.634 kb on - strand, within Synpcc7942_0166 at 165.655 kb on - strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.674 kb on + strand, within Synpcc7942_0166 at 165.688 kb on - strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.705 kb on - strand, within Synpcc7942_0166 at 165.820 kb on + strand, within Synpcc7942_0166 at 165.834 kb on - strand, within Synpcc7942_0166 at 165.839 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on - strand, within Synpcc7942_0166 at 165.855 kb on - strand, within Synpcc7942_0166 at 165.860 kb on - strand, within Synpcc7942_0166 at 165.892 kb on + strand, within Synpcc7942_0166 at 165.905 kb on + strand, within Synpcc7942_0166
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml remove 163,572 - Synpcc7942_0162 0.48 -2.2 163,578 + Synpcc7942_0162 0.49 -0.2 163,578 + Synpcc7942_0162 0.49 -1.4 163,581 - Synpcc7942_0162 0.50 -2.6 163,583 + -0.7 163,591 - Synpcc7942_0162 0.53 -1.2 163,617 + Synpcc7942_0162 0.60 -0.0 163,653 + Synpcc7942_0162 0.71 +0.9 163,668 - Synpcc7942_0162 0.75 +0.3 163,673 + Synpcc7942_0162 0.76 -1.2 163,681 - Synpcc7942_0162 0.79 -2.0 163,681 - Synpcc7942_0162 0.79 -0.7 163,681 - Synpcc7942_0162 0.79 +0.3 163,683 + Synpcc7942_0162 0.79 -2.2 163,686 - Synpcc7942_0162 0.80 -2.0 163,687 - Synpcc7942_0162 0.80 +1.4 163,702 + Synpcc7942_0162 0.85 -1.2 163,707 - Synpcc7942_0162 0.86 -0.5 163,721 + +1.7 163,741 - -1.1 163,749 + +0.3 163,757 - -1.2 163,807 + -2.7 163,858 - Synpcc7942_0163 0.13 +1.3 163,860 - Synpcc7942_0163 0.13 +0.6 163,871 + Synpcc7942_0163 0.15 +1.1 163,871 + Synpcc7942_0163 0.15 -1.7 163,871 + Synpcc7942_0163 0.15 +1.3 163,876 + Synpcc7942_0163 0.15 +1.1 163,879 - Synpcc7942_0163 0.16 -0.7 163,879 - Synpcc7942_0163 0.16 -2.1 163,879 - Synpcc7942_0163 0.16 +0.0 163,897 + Synpcc7942_0163 0.18 +1.7 163,897 + Synpcc7942_0163 0.18 -1.2 163,905 - Synpcc7942_0163 0.19 +1.1 163,905 - Synpcc7942_0163 0.19 -1.2 163,922 - Synpcc7942_0163 0.21 +1.5 163,923 - Synpcc7942_0163 0.22 +1.9 163,923 - Synpcc7942_0163 0.22 +0.1 163,929 + -1.7 163,934 + Synpcc7942_0163 0.23 +1.3 163,968 + Synpcc7942_0163 0.28 +0.4 164,028 - Synpcc7942_0163 0.36 +4.3 164,050 + Synpcc7942_0163 0.39 +0.6 164,052 + Synpcc7942_0163 0.39 +0.6 164,069 + Synpcc7942_0163 0.41 +0.3 164,076 - Synpcc7942_0163 0.42 +2.3 164,085 + Synpcc7942_0163 0.43 -1.2 164,085 + Synpcc7942_0163 0.43 +1.6 164,085 + Synpcc7942_0163 0.43 +1.2 164,097 + Synpcc7942_0163 0.45 -2.5 164,097 + Synpcc7942_0163 0.45 -1.2 164,097 + Synpcc7942_0163 0.45 -1.0 164,105 - Synpcc7942_0163 0.46 -2.4 164,121 + Synpcc7942_0163 0.48 -0.1 164,148 + Synpcc7942_0163 0.52 +0.5 164,148 + Synpcc7942_0163 0.52 +2.5 164,153 - Synpcc7942_0163 0.52 -2.2 164,219 + Synpcc7942_0163 0.61 -0.7 164,227 + Synpcc7942_0163 0.62 +0.9 164,236 + Synpcc7942_0163 0.63 -0.5 164,298 + Synpcc7942_0163 0.72 -2.2 164,298 + Synpcc7942_0163 0.72 +2.1 164,305 + Synpcc7942_0163 0.73 -1.2 164,306 - Synpcc7942_0163 0.73 -1.7 164,344 + Synpcc7942_0163 0.78 +1.3 164,385 - Synpcc7942_0163 0.83 -1.2 164,390 + Synpcc7942_0163 0.84 -0.9 164,418 + Synpcc7942_0163 0.88 -0.8 164,426 - Synpcc7942_0163 0.89 +0.3 164,476 + -0.7 164,484 - -1.8 164,497 - +2.3 164,499 + -1.2 164,500 + -3.4 164,500 + +0.5 164,500 + +1.2 164,500 + -0.9 164,500 + -0.7 164,500 + +0.8 164,508 - -0.7 164,508 - +0.3 164,508 - -2.2 164,510 + -2.0 164,513 - -0.7 164,517 + -0.7 164,525 - -1.9 164,551 + +0.3 164,551 + -1.7 164,559 - +0.2 164,559 - -1.7 164,559 - -1.0 164,598 + Synpcc7942_0164 0.12 -0.7 164,598 + Synpcc7942_0164 0.12 +0.3 164,601 - Synpcc7942_0164 0.13 +1.2 164,607 - Synpcc7942_0164 0.14 -2.1 164,666 + Synpcc7942_0164 0.28 -0.8 164,666 + Synpcc7942_0164 0.28 +4.3 164,666 + Synpcc7942_0164 0.28 -3.1 164,674 - Synpcc7942_0164 0.30 -2.8 164,674 - Synpcc7942_0164 0.30 -0.1 164,676 + Synpcc7942_0164 0.30 +2.0 164,795 + Synpcc7942_0164 0.59 -2.0 164,803 - Synpcc7942_0164 0.61 -1.2 164,816 + Synpcc7942_0164 0.64 -2.8 164,824 - Synpcc7942_0164 0.66 +0.3 164,832 - Synpcc7942_0164 0.68 -4.0 164,832 - -0.7 164,832 - Synpcc7942_0164 0.68 -3.8 164,914 - Synpcc7942_0164 0.87 -0.4 164,939 + +0.5 164,954 + -0.7 164,994 + -0.7 165,029 - -0.6 165,035 + -3.7 165,051 - ycf36 Synpcc7942_0165 0.13 -1.2 165,069 + ycf36 Synpcc7942_0165 0.17 +1.3 165,072 - ycf36 Synpcc7942_0165 0.17 -1.2 165,090 - +0.3 165,090 - ycf36 Synpcc7942_0165 0.21 -1.7 165,093 + ycf36 Synpcc7942_0165 0.21 -2.7 165,096 - ycf36 Synpcc7942_0165 0.22 +1.3 165,098 + ycf36 Synpcc7942_0165 0.22 +2.2 165,100 - ycf36 Synpcc7942_0165 0.23 +0.1 165,105 + ycf36 Synpcc7942_0165 0.24 +1.4 165,113 + ycf36 Synpcc7942_0165 0.25 -2.5 165,113 - ycf36 Synpcc7942_0165 0.25 +0.5 165,118 + ycf36 Synpcc7942_0165 0.26 +1.3 165,126 - ycf36 Synpcc7942_0165 0.28 +0.3 165,126 - ycf36 Synpcc7942_0165 0.28 -0.2 165,126 - ycf36 Synpcc7942_0165 0.28 -2.0 165,137 - ycf36 Synpcc7942_0165 0.30 +1.6 165,142 - ycf36 Synpcc7942_0165 0.31 +0.3 165,178 + ycf36 Synpcc7942_0165 0.38 -0.9 165,179 + ycf36 Synpcc7942_0165 0.39 -2.5 165,186 - ycf36 Synpcc7942_0165 0.40 -1.7 165,186 - ycf36 Synpcc7942_0165 0.40 +1.5 165,186 - ycf36 Synpcc7942_0165 0.40 -1.7 165,195 + ycf36 Synpcc7942_0165 0.42 +2.2 165,209 + ycf36 Synpcc7942_0165 0.45 -1.4 165,254 - ycf36 Synpcc7942_0165 0.53 -2.5 165,288 + ycf36 Synpcc7942_0165 0.60 +1.5 165,296 - ycf36 Synpcc7942_0165 0.62 -2.1 165,312 - ycf36 Synpcc7942_0165 0.65 -1.2 165,367 + ycf36 Synpcc7942_0165 0.76 -1.1 165,452 - -1.7 165,468 + +0.3 165,508 - -1.5 165,593 - Synpcc7942_0166 0.12 +0.3 165,602 + Synpcc7942_0166 0.12 -2.0 165,602 + Synpcc7942_0166 0.12 -2.2 165,618 + Synpcc7942_0166 0.14 -3.8 165,634 - Synpcc7942_0166 0.16 -2.5 165,655 - Synpcc7942_0166 0.18 -2.7 165,662 + Synpcc7942_0166 0.19 -3.1 165,662 + Synpcc7942_0166 0.19 -1.2 165,674 + Synpcc7942_0166 0.20 -3.7 165,688 - Synpcc7942_0166 0.21 -2.0 165,697 + Synpcc7942_0166 0.22 -1.2 165,697 + Synpcc7942_0166 0.22 -1.7 165,705 - Synpcc7942_0166 0.23 -1.5 165,820 + Synpcc7942_0166 0.35 -2.0 165,834 - Synpcc7942_0166 0.37 -1.2 165,839 + Synpcc7942_0166 0.37 -2.0 165,846 + Synpcc7942_0166 0.38 -2.2 165,846 + Synpcc7942_0166 0.38 -3.0 165,852 + Synpcc7942_0166 0.39 -2.1 165,852 + Synpcc7942_0166 0.39 -2.2 165,852 + Synpcc7942_0166 0.39 -3.0 165,852 - Synpcc7942_0166 0.39 +1.9 165,855 - Synpcc7942_0166 0.39 -2.2 165,860 - Synpcc7942_0166 0.40 -0.7 165,892 + Synpcc7942_0166 0.43 -1.7 165,905 + Synpcc7942_0166 0.44 +0.0
Or see this region's nucleotide sequence