Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06441 and H281DRAFT_06442 are separated by 42 nucleotides H281DRAFT_06442 and H281DRAFT_06443 are separated by 143 nucleotides
H281DRAFT_06441: H281DRAFT_06441 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10), at 46,043 to 47,437
_06441
H281DRAFT_06442: H281DRAFT_06442 - cytochrome d ubiquinol oxidase subunit II, at 47,480 to 48,466
_06442
H281DRAFT_06443: H281DRAFT_06443 - molybdopterin molybdotransferase, at 48,610 to 49,824
_06443
Position (kb) 47
48
49 Strain fitness (log2 ratio) -1
0
1
2 at 47.013 kb on - strand, within H281DRAFT_06441 at 47.229 kb on - strand, within H281DRAFT_06441 at 47.459 kb on - strand at 47.552 kb on + strand at 47.721 kb on - strand, within H281DRAFT_06442 at 47.744 kb on + strand, within H281DRAFT_06442 at 47.745 kb on - strand, within H281DRAFT_06442 at 47.745 kb on - strand, within H281DRAFT_06442 at 47.745 kb on - strand, within H281DRAFT_06442 at 47.965 kb on - strand, within H281DRAFT_06442 at 48.064 kb on + strand at 48.210 kb on - strand, within H281DRAFT_06442 at 48.210 kb on - strand, within H281DRAFT_06442 at 48.305 kb on + strand at 48.542 kb on + strand at 48.592 kb on + strand at 49.004 kb on + strand, within H281DRAFT_06443 at 49.005 kb on - strand, within H281DRAFT_06443 at 49.009 kb on - strand, within H281DRAFT_06443 at 49.009 kb on - strand, within H281DRAFT_06443 at 49.009 kb on - strand, within H281DRAFT_06443 at 49.009 kb on - strand, within H281DRAFT_06443 at 49.009 kb on - strand, within H281DRAFT_06443 at 49.201 kb on + strand, within H281DRAFT_06443
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 47,013 - H281DRAFT_06441 0.70 -1.6 47,229 - H281DRAFT_06441 0.85 -0.7 47,459 - -0.2 47,552 + -0.3 47,721 - H281DRAFT_06442 0.24 +0.2 47,744 + H281DRAFT_06442 0.27 +1.3 47,745 - H281DRAFT_06442 0.27 +0.5 47,745 - H281DRAFT_06442 0.27 -0.7 47,745 - H281DRAFT_06442 0.27 +0.3 47,965 - H281DRAFT_06442 0.49 +2.4 48,064 + +2.1 48,210 - H281DRAFT_06442 0.74 +1.4 48,210 - H281DRAFT_06442 0.74 +0.9 48,305 + +2.5 48,542 + +0.2 48,592 + +0.3 49,004 + H281DRAFT_06443 0.32 -0.8 49,005 - H281DRAFT_06443 0.33 +0.5 49,009 - H281DRAFT_06443 0.33 -0.5 49,009 - H281DRAFT_06443 0.33 +0.2 49,009 - H281DRAFT_06443 0.33 -0.9 49,009 - H281DRAFT_06443 0.33 +1.3 49,009 - H281DRAFT_06443 0.33 -1.0 49,201 + H281DRAFT_06443 0.49 -0.1
Or see this region's nucleotide sequence