Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06007

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06005 and H281DRAFT_06006 are separated by 279 nucleotidesH281DRAFT_06006 and H281DRAFT_06007 are separated by 105 nucleotidesH281DRAFT_06007 and H281DRAFT_06008 are separated by 632 nucleotides H281DRAFT_06005: H281DRAFT_06005 - methyltransferase, FkbM family, at 6,078 to 6,788 _06005 H281DRAFT_06006: H281DRAFT_06006 - MEKHLA domain-containing protein, at 7,068 to 7,523 _06006 H281DRAFT_06007: H281DRAFT_06007 - amino acid ABC transporter substrate-binding protein, PAAT family, at 7,629 to 8,360 _06007 H281DRAFT_06008: H281DRAFT_06008 - RNA polymerase, sigma 70 subunit, RpoD, at 8,993 to 11,227 _06008 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 6.644 kb on - strand, within H281DRAFT_06005at 6.644 kb on - strand, within H281DRAFT_06005at 6.673 kb on - strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.713 kb on - strand, within H281DRAFT_06005at 6.713 kb on - strand, within H281DRAFT_06005at 6.776 kb on + strandat 6.829 kb on + strandat 6.859 kb on + strandat 6.859 kb on + strandat 6.927 kb on + strandat 7.036 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.345 kb on + strand, within H281DRAFT_06006at 7.346 kb on - strand, within H281DRAFT_06006at 7.346 kb on - strand, within H281DRAFT_06006at 7.436 kb on + strand, within H281DRAFT_06006at 7.437 kb on - strand, within H281DRAFT_06006at 7.457 kb on + strand, within H281DRAFT_06006at 7.474 kb on + strand, within H281DRAFT_06006at 7.478 kb on + strandat 7.478 kb on + strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.528 kb on + strandat 7.529 kb on - strandat 7.627 kb on + strandat 7.628 kb on - strandat 7.714 kb on + strand, within H281DRAFT_06007at 7.714 kb on + strand, within H281DRAFT_06007at 7.892 kb on - strand, within H281DRAFT_06007at 7.892 kb on - strand, within H281DRAFT_06007at 7.923 kb on + strand, within H281DRAFT_06007at 8.053 kb on + strand, within H281DRAFT_06007at 8.053 kb on + strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.193 kb on + strand, within H281DRAFT_06007at 8.193 kb on + strand, within H281DRAFT_06007at 8.194 kb on - strand, within H281DRAFT_06007at 8.220 kb on - strand, within H281DRAFT_06007at 8.402 kb on + strandat 8.403 kb on - strandat 8.836 kb on - strandat 8.853 kb on + strandat 8.853 kb on + strandat 8.853 kb on + strandat 8.854 kb on - strandat 8.854 kb on - strandat 8.893 kb on + strandat 8.894 kb on - strandat 8.894 kb on - strandat 8.894 kb on - strandat 8.896 kb on + strandat 8.896 kb on + strandat 8.964 kb on + strandat 8.965 kb on - strandat 8.965 kb on - strandat 8.968 kb on + strandat 8.969 kb on - strandat 8.969 kb on - strandat 8.975 kb on + strandat 8.976 kb on - strandat 8.976 kb on - strandat 9.262 kb on + strand, within H281DRAFT_06008at 9.263 kb on - strand, within H281DRAFT_06008

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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6,644 - H281DRAFT_06005 0.80 -1.9
6,644 - H281DRAFT_06005 0.80 -1.4
6,673 - H281DRAFT_06005 0.84 +0.1
6,712 + H281DRAFT_06005 0.89 +0.4
6,712 + H281DRAFT_06005 0.89 +1.4
6,712 + H281DRAFT_06005 0.89 -0.8
6,713 - H281DRAFT_06005 0.89 -0.4
6,713 - H281DRAFT_06005 0.89 +0.7
6,776 + -0.2
6,829 + +0.1
6,859 + +0.9
6,859 + -0.2
6,927 + +0.1
7,036 + +0.8
7,060 + +0.0
7,060 + -0.9
7,060 + -0.3
7,060 + -0.8
7,345 + H281DRAFT_06006 0.61 +0.5
7,346 - H281DRAFT_06006 0.61 -0.1
7,346 - H281DRAFT_06006 0.61 -0.6
7,436 + H281DRAFT_06006 0.81 +0.2
7,437 - H281DRAFT_06006 0.81 -1.0
7,457 + H281DRAFT_06006 0.85 -1.7
7,474 + H281DRAFT_06006 0.89 -0.7
7,478 + -0.2
7,478 + -1.0
7,479 - +1.8
7,479 - -0.1
7,479 - +0.8
7,479 - +1.0
7,528 + -0.1
7,529 - +1.2
7,627 + +0.0
7,628 - -0.1
7,714 + H281DRAFT_06007 0.12 +0.4
7,714 + H281DRAFT_06007 0.12 -0.4
7,892 - H281DRAFT_06007 0.36 -0.6
7,892 - H281DRAFT_06007 0.36 -0.6
7,923 + H281DRAFT_06007 0.40 -0.6
8,053 + H281DRAFT_06007 0.58 +0.6
8,053 + H281DRAFT_06007 0.58 +0.4
8,054 - H281DRAFT_06007 0.58 -0.7
8,054 - H281DRAFT_06007 0.58 +0.1
8,054 - H281DRAFT_06007 0.58 +1.2
8,054 - H281DRAFT_06007 0.58 -0.1
8,193 + H281DRAFT_06007 0.77 -0.3
8,193 + H281DRAFT_06007 0.77 -1.0
8,194 - H281DRAFT_06007 0.77 -0.0
8,220 - H281DRAFT_06007 0.81 +0.7
8,402 + +0.3
8,403 - +0.3
8,836 - -0.1
8,853 + +0.4
8,853 + +0.4
8,853 + +2.6
8,854 - -1.0
8,854 - -0.6
8,893 + +0.4
8,894 - -0.5
8,894 - -0.2
8,894 - +0.5
8,896 + -1.9
8,896 + +0.2
8,964 + +0.4
8,965 - -0.9
8,965 - -0.3
8,968 + +0.5
8,969 - +0.1
8,969 - +0.5
8,975 + -0.4
8,976 - -0.4
8,976 - -0.6
9,262 + H281DRAFT_06008 0.12 -1.8
9,263 - H281DRAFT_06008 0.12 -2.0

Or see this region's nucleotide sequence