Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05983

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05982 and H281DRAFT_05983 are separated by 46 nucleotidesH281DRAFT_05983 and H281DRAFT_05984 are separated by 145 nucleotidesH281DRAFT_05984 and H281DRAFT_05985 are separated by 45 nucleotides H281DRAFT_05982: H281DRAFT_05982 - Predicted arabinose efflux permease, MFS family, at 124,841 to 126,259 _05982 H281DRAFT_05983: H281DRAFT_05983 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 126,306 to 127,058 _05983 H281DRAFT_05984: H281DRAFT_05984 - conserved hypothetical protein, at 127,204 to 127,506 _05984 H281DRAFT_05985: H281DRAFT_05985 - Predicted integral membrane protein, at 127,552 to 128,256 _05985 Position (kb) 126 127 128Strain fitness (log2 ratio) -1 0 1 2at 125.386 kb on - strand, within H281DRAFT_05982at 125.618 kb on + strand, within H281DRAFT_05982at 125.756 kb on + strand, within H281DRAFT_05982at 125.852 kb on + strand, within H281DRAFT_05982at 125.852 kb on + strand, within H281DRAFT_05982at 125.853 kb on - strand, within H281DRAFT_05982at 125.867 kb on - strand, within H281DRAFT_05982at 125.868 kb on + strand, within H281DRAFT_05982at 126.031 kb on - strand, within H281DRAFT_05982at 126.106 kb on - strand, within H281DRAFT_05982at 126.130 kb on - strandat 126.426 kb on + strand, within H281DRAFT_05983at 126.772 kb on + strand, within H281DRAFT_05983at 127.011 kb on + strandat 127.012 kb on - strandat 127.204 kb on - strandat 127.265 kb on - strand, within H281DRAFT_05984at 127.310 kb on - strand, within H281DRAFT_05984at 127.342 kb on + strand, within H281DRAFT_05984at 127.549 kb on + strandat 127.550 kb on - strandat 127.553 kb on + strandat 127.553 kb on + strandat 127.793 kb on + strand, within H281DRAFT_05985at 127.794 kb on - strand, within H281DRAFT_05985at 127.794 kb on - strand, within H281DRAFT_05985at 127.794 kb on - strand, within H281DRAFT_05985at 128.027 kb on + strand, within H281DRAFT_05985

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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125,386 - H281DRAFT_05982 0.38 +0.3
125,618 + H281DRAFT_05982 0.55 -0.8
125,756 + H281DRAFT_05982 0.64 -1.2
125,852 + H281DRAFT_05982 0.71 -0.5
125,852 + H281DRAFT_05982 0.71 +0.1
125,853 - H281DRAFT_05982 0.71 -0.2
125,867 - H281DRAFT_05982 0.72 +0.6
125,868 + H281DRAFT_05982 0.72 +0.0
126,031 - H281DRAFT_05982 0.84 +0.7
126,106 - H281DRAFT_05982 0.89 +0.8
126,130 - +0.5
126,426 + H281DRAFT_05983 0.16 +0.9
126,772 + H281DRAFT_05983 0.62 +1.0
127,011 + +0.5
127,012 - +0.4
127,204 - -0.2
127,265 - H281DRAFT_05984 0.20 -0.7
127,310 - H281DRAFT_05984 0.35 -0.6
127,342 + H281DRAFT_05984 0.46 -1.5
127,549 + +2.6
127,550 - +1.0
127,553 + -0.6
127,553 + +0.1
127,793 + H281DRAFT_05985 0.34 -0.7
127,794 - H281DRAFT_05985 0.34 +0.3
127,794 - H281DRAFT_05985 0.34 +0.6
127,794 - H281DRAFT_05985 0.34 +1.2
128,027 + H281DRAFT_05985 0.67 +0.1

Or see this region's nucleotide sequence