Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05698

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05696 and H281DRAFT_05697 are separated by 49 nucleotidesH281DRAFT_05697 and H281DRAFT_05698 are separated by 126 nucleotidesH281DRAFT_05698 and H281DRAFT_05699 are separated by 290 nucleotides H281DRAFT_05696: H281DRAFT_05696 - Xaa-Pro aminopeptidase, at 112,057 to 113,871 _05696 H281DRAFT_05697: H281DRAFT_05697 - 2-haloacid dehalogenase, at 113,921 to 114,544 _05697 H281DRAFT_05698: H281DRAFT_05698 - protein of unknown function (DUF748), at 114,671 to 115,795 _05698 H281DRAFT_05699: H281DRAFT_05699 - sulfate-transporting ATPase, at 116,086 to 117,753 _05699 Position (kb) 114 115 116Strain fitness (log2 ratio) -2 -1 0 1at 113.709 kb on - strandat 113.785 kb on + strandat 113.857 kb on - strandat 113.904 kb on + strandat 113.905 kb on - strandat 113.905 kb on - strandat 113.981 kb on + strandat 113.987 kb on + strand, within H281DRAFT_05697at 113.988 kb on - strand, within H281DRAFT_05697at 114.149 kb on + strand, within H281DRAFT_05697at 114.272 kb on + strand, within H281DRAFT_05697at 114.273 kb on - strand, within H281DRAFT_05697at 114.420 kb on + strand, within H281DRAFT_05697at 114.420 kb on + strand, within H281DRAFT_05697at 114.421 kb on - strand, within H281DRAFT_05697at 114.646 kb on + strandat 114.647 kb on - strandat 114.672 kb on + strandat 114.672 kb on + strandat 114.673 kb on - strandat 114.990 kb on + strand, within H281DRAFT_05698at 115.071 kb on + strand, within H281DRAFT_05698at 115.072 kb on - strand, within H281DRAFT_05698at 115.072 kb on - strand, within H281DRAFT_05698at 115.268 kb on + strand, within H281DRAFT_05698at 115.281 kb on + strand, within H281DRAFT_05698at 115.282 kb on - strand, within H281DRAFT_05698at 115.309 kb on - strand, within H281DRAFT_05698at 115.544 kb on - strand, within H281DRAFT_05698at 115.708 kb on - strandat 115.873 kb on + strandat 115.873 kb on + strandat 115.874 kb on - strandat 115.874 kb on - strandat 115.875 kb on + strandat 115.875 kb on + strandat 115.875 kb on + strandat 115.875 kb on + strandat 115.876 kb on - strandat 115.876 kb on - strandat 115.876 kb on - strandat 115.888 kb on + strandat 115.889 kb on - strandat 115.945 kb on + strandat 115.946 kb on - strandat 116.094 kb on + strandat 116.174 kb on + strandat 116.174 kb on + strandat 116.175 kb on - strandat 116.175 kb on - strandat 116.193 kb on + strandat 116.474 kb on + strand, within H281DRAFT_05699at 116.474 kb on + strand, within H281DRAFT_05699at 116.475 kb on - strand, within H281DRAFT_05699at 116.495 kb on + strand, within H281DRAFT_05699at 116.495 kb on + strand, within H281DRAFT_05699at 116.495 kb on + strand, within H281DRAFT_05699at 116.496 kb on - strand, within H281DRAFT_05699at 116.496 kb on - strand, within H281DRAFT_05699at 116.585 kb on + strand, within H281DRAFT_05699at 116.586 kb on - strand, within H281DRAFT_05699at 116.586 kb on - strand, within H281DRAFT_05699at 116.756 kb on + strand, within H281DRAFT_05699at 116.756 kb on + strand, within H281DRAFT_05699at 116.757 kb on - strand, within H281DRAFT_05699

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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113,709 - +1.0
113,785 + +0.0
113,857 - +0.6
113,904 + +0.2
113,905 - -0.8
113,905 - +0.2
113,981 + +0.6
113,987 + H281DRAFT_05697 0.11 +0.2
113,988 - H281DRAFT_05697 0.11 -0.0
114,149 + H281DRAFT_05697 0.37 +0.7
114,272 + H281DRAFT_05697 0.56 +0.9
114,273 - H281DRAFT_05697 0.56 +0.2
114,420 + H281DRAFT_05697 0.80 -0.2
114,420 + H281DRAFT_05697 0.80 -0.0
114,421 - H281DRAFT_05697 0.80 -1.3
114,646 + -0.2
114,647 - -0.0
114,672 + +0.1
114,672 + +0.2
114,673 - +0.6
114,990 + H281DRAFT_05698 0.28 +1.6
115,071 + H281DRAFT_05698 0.36 -0.2
115,072 - H281DRAFT_05698 0.36 +1.0
115,072 - H281DRAFT_05698 0.36 +1.4
115,268 + H281DRAFT_05698 0.53 -0.1
115,281 + H281DRAFT_05698 0.54 +1.5
115,282 - H281DRAFT_05698 0.54 +0.3
115,309 - H281DRAFT_05698 0.57 -0.7
115,544 - H281DRAFT_05698 0.78 -0.4
115,708 - +0.4
115,873 + +0.0
115,873 + +0.3
115,874 - -0.7
115,874 - -0.5
115,875 + -0.8
115,875 + +0.1
115,875 + +0.5
115,875 + +0.7
115,876 - +0.1
115,876 - +0.4
115,876 - +0.3
115,888 + +0.4
115,889 - -0.1
115,945 + -0.2
115,946 - -0.1
116,094 + -0.3
116,174 + +0.1
116,174 + +0.7
116,175 - +0.5
116,175 - +1.4
116,193 + -2.3
116,474 + H281DRAFT_05699 0.23 -1.9
116,474 + H281DRAFT_05699 0.23 +0.2
116,475 - H281DRAFT_05699 0.23 -0.9
116,495 + H281DRAFT_05699 0.25 -0.4
116,495 + H281DRAFT_05699 0.25 +0.1
116,495 + H281DRAFT_05699 0.25 -1.9
116,496 - H281DRAFT_05699 0.25 +1.2
116,496 - H281DRAFT_05699 0.25 -0.4
116,585 + H281DRAFT_05699 0.30 +0.5
116,586 - H281DRAFT_05699 0.30 +0.1
116,586 - H281DRAFT_05699 0.30 +0.2
116,756 + H281DRAFT_05699 0.40 +0.8
116,756 + H281DRAFT_05699 0.40 +0.2
116,757 - H281DRAFT_05699 0.40 -0.3

Or see this region's nucleotide sequence