Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04903 and H281DRAFT_04904 overlap by 4 nucleotides H281DRAFT_04904 and H281DRAFT_04905 are separated by 25 nucleotides H281DRAFT_04905 and H281DRAFT_04906 are separated by 112 nucleotides
H281DRAFT_04903: H281DRAFT_04903 - outer membrane transport energization protein TonB, at 56,401 to 57,174
_04903
H281DRAFT_04904: H281DRAFT_04904 - outer membrane transport energization protein ExbD, at 57,171 to 57,590
_04904
H281DRAFT_04905: H281DRAFT_04905 - outer membrane transport energization protein ExbB, at 57,616 to 58,227
_04905
H281DRAFT_04906: H281DRAFT_04906 - iron complex outermembrane recepter protein, at 58,340 to 61,042
_04906
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1 at 57.253 kb on + strand, within H281DRAFT_04904 at 57.569 kb on - strand at 57.569 kb on - strand at 57.696 kb on - strand, within H281DRAFT_04905 at 58.022 kb on + strand, within H281DRAFT_04905 at 58.250 kb on - strand at 58.341 kb on + strand at 58.342 kb on - strand at 58.482 kb on + strand at 58.536 kb on + strand at 58.771 kb on - strand, within H281DRAFT_04906 at 58.993 kb on - strand, within H281DRAFT_04906 at 59.049 kb on + strand, within H281DRAFT_04906 at 59.049 kb on + strand, within H281DRAFT_04906 at 59.050 kb on - strand, within H281DRAFT_04906 at 59.218 kb on - strand, within H281DRAFT_04906
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 57,253 + H281DRAFT_04904 0.20 -0.5 57,569 - -0.1 57,569 - -1.6 57,696 - H281DRAFT_04905 0.13 +0.3 58,022 + H281DRAFT_04905 0.66 +1.0 58,250 - -1.5 58,341 + -0.3 58,342 - +0.5 58,482 + +1.6 58,536 + -0.3 58,771 - H281DRAFT_04906 0.16 +0.4 58,993 - H281DRAFT_04906 0.24 +0.1 59,049 + H281DRAFT_04906 0.26 +0.5 59,049 + H281DRAFT_04906 0.26 +0.1 59,050 - H281DRAFT_04906 0.26 -0.7 59,218 - H281DRAFT_04906 0.32 +0.7
Or see this region's nucleotide sequence