Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04892

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04892 and H281DRAFT_04893 are separated by 204 nucleotides H281DRAFT_04892: H281DRAFT_04892 - Protein of unknown function (DUF1328), at 43,109 to 43,270 _04892 H281DRAFT_04893: H281DRAFT_04893 - transcriptional regulator, LysR family, at 43,475 to 44,398 _04893 Position (kb) 43 44Strain fitness (log2 ratio) -1 0 1at 42.110 kb on + strandat 42.120 kb on + strandat 42.271 kb on + strandat 42.289 kb on + strandat 42.290 kb on - strandat 42.290 kb on - strandat 42.291 kb on + strandat 42.292 kb on - strandat 42.943 kb on - strandat 42.943 kb on - strandat 43.075 kb on + strandat 43.089 kb on - strandat 43.287 kb on - strandat 43.357 kb on + strandat 43.409 kb on + strandat 43.409 kb on + strandat 43.409 kb on + strandat 43.410 kb on - strandat 43.962 kb on - strand, within H281DRAFT_04893at 43.962 kb on - strand, within H281DRAFT_04893

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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42,110 + +0.4
42,120 + +0.4
42,271 + +0.7
42,289 + +0.3
42,290 - +0.9
42,290 - +0.1
42,291 + -0.5
42,292 - +0.4
42,943 - +0.6
42,943 - -0.6
43,075 + -0.5
43,089 - +1.2
43,287 - -1.5
43,357 + +0.0
43,409 + +0.1
43,409 + +0.9
43,409 + +0.4
43,410 - -0.2
43,962 - H281DRAFT_04893 0.53 -1.1
43,962 - H281DRAFT_04893 0.53 +0.3

Or see this region's nucleotide sequence