Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04888 and H281DRAFT_04889 are separated by 59 nucleotides H281DRAFT_04889 and H281DRAFT_04890 are separated by 76 nucleotides H281DRAFT_04890 and H281DRAFT_04891 are separated by 37 nucleotides
H281DRAFT_04888: H281DRAFT_04888 - protein of unknown function (DUF4118), at 33,012 to 34,415
_04888
H281DRAFT_04889: H281DRAFT_04889 - hypothetical protein, at 34,475 to 35,026
_04889
H281DRAFT_04890: H281DRAFT_04890 - Tetratricopeptide repeat-containing protein, at 35,103 to 38,999
_04890
H281DRAFT_04891: H281DRAFT_04891 - hypothetical protein, at 39,037 to 41,988
_04891
Position (kb) 35
36
37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.656 kb on + strand, within H281DRAFT_04889 at 34.689 kb on + strand, within H281DRAFT_04889 at 35.070 kb on - strand at 35.250 kb on + strand at 35.302 kb on + strand at 35.303 kb on - strand at 35.352 kb on - strand at 35.353 kb on + strand at 35.618 kb on - strand, within H281DRAFT_04890 at 35.830 kb on + strand, within H281DRAFT_04890 at 35.831 kb on - strand, within H281DRAFT_04890 at 35.972 kb on - strand, within H281DRAFT_04890 at 36.155 kb on - strand, within H281DRAFT_04890 at 36.268 kb on + strand, within H281DRAFT_04890 at 36.269 kb on - strand, within H281DRAFT_04890 at 36.721 kb on + strand, within H281DRAFT_04890 at 37.019 kb on - strand, within H281DRAFT_04890 at 37.133 kb on - strand, within H281DRAFT_04890 at 37.135 kb on + strand, within H281DRAFT_04890 at 37.135 kb on + strand, within H281DRAFT_04890 at 37.412 kb on - strand, within H281DRAFT_04890 at 37.492 kb on + strand, within H281DRAFT_04890 at 37.545 kb on - strand, within H281DRAFT_04890 at 37.545 kb on - strand, within H281DRAFT_04890 at 37.630 kb on + strand, within H281DRAFT_04890 at 37.631 kb on - strand, within H281DRAFT_04890 at 37.631 kb on - strand, within H281DRAFT_04890 at 37.705 kb on + strand, within H281DRAFT_04890 at 37.706 kb on - strand, within H281DRAFT_04890 at 37.783 kb on + strand, within H281DRAFT_04890 at 37.944 kb on + strand, within H281DRAFT_04890 at 37.974 kb on - strand, within H281DRAFT_04890 at 37.974 kb on - strand, within H281DRAFT_04890 at 38.144 kb on + strand, within H281DRAFT_04890 at 38.146 kb on + strand, within H281DRAFT_04890 at 38.146 kb on + strand, within H281DRAFT_04890 at 38.147 kb on - strand, within H281DRAFT_04890 at 38.152 kb on + strand, within H281DRAFT_04890 at 38.830 kb on + strand at 38.974 kb on - strand at 38.974 kb on - strand at 39.039 kb on - strand at 39.068 kb on + strand at 39.069 kb on - strand at 39.201 kb on - strand at 39.376 kb on - strand, within H281DRAFT_04891 at 39.377 kb on + strand, within H281DRAFT_04891 at 39.377 kb on + strand, within H281DRAFT_04891 at 39.377 kb on + strand, within H281DRAFT_04891 at 39.378 kb on - strand, within H281DRAFT_04891 at 39.719 kb on + strand, within H281DRAFT_04891 at 39.719 kb on + strand, within H281DRAFT_04891 at 39.720 kb on - strand, within H281DRAFT_04891 at 39.720 kb on - strand, within H281DRAFT_04891 at 39.848 kb on + strand, within H281DRAFT_04891 at 39.966 kb on - strand, within H281DRAFT_04891
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 34,656 + H281DRAFT_04889 0.33 -0.7 34,689 + H281DRAFT_04889 0.39 -0.8 35,070 - +0.5 35,250 + +0.3 35,302 + -0.2 35,303 - -0.0 35,352 - -0.2 35,353 + -0.3 35,618 - H281DRAFT_04890 0.13 +0.3 35,830 + H281DRAFT_04890 0.19 -1.0 35,831 - H281DRAFT_04890 0.19 +0.4 35,972 - H281DRAFT_04890 0.22 +1.5 36,155 - H281DRAFT_04890 0.27 +0.7 36,268 + H281DRAFT_04890 0.30 -0.2 36,269 - H281DRAFT_04890 0.30 -0.1 36,721 + H281DRAFT_04890 0.42 +1.3 37,019 - H281DRAFT_04890 0.49 +0.2 37,133 - H281DRAFT_04890 0.52 -0.0 37,135 + H281DRAFT_04890 0.52 -0.5 37,135 + H281DRAFT_04890 0.52 -1.0 37,412 - H281DRAFT_04890 0.59 +0.6 37,492 + H281DRAFT_04890 0.61 +0.5 37,545 - H281DRAFT_04890 0.63 +0.9 37,545 - H281DRAFT_04890 0.63 -0.3 37,630 + H281DRAFT_04890 0.65 -1.1 37,631 - H281DRAFT_04890 0.65 +0.1 37,631 - H281DRAFT_04890 0.65 -0.1 37,705 + H281DRAFT_04890 0.67 -2.5 37,706 - H281DRAFT_04890 0.67 +0.3 37,783 + H281DRAFT_04890 0.69 +0.3 37,944 + H281DRAFT_04890 0.73 +0.4 37,974 - H281DRAFT_04890 0.74 +1.2 37,974 - H281DRAFT_04890 0.74 -1.0 38,144 + H281DRAFT_04890 0.78 +0.8 38,146 + H281DRAFT_04890 0.78 -0.0 38,146 + H281DRAFT_04890 0.78 +2.1 38,147 - H281DRAFT_04890 0.78 -0.3 38,152 + H281DRAFT_04890 0.78 -0.7 38,830 + +1.1 38,974 - -0.3 38,974 - -1.3 39,039 - -0.5 39,068 + +0.7 39,069 - +0.5 39,201 - +0.5 39,376 - H281DRAFT_04891 0.11 -0.1 39,377 + H281DRAFT_04891 0.12 +0.4 39,377 + H281DRAFT_04891 0.12 +0.1 39,377 + H281DRAFT_04891 0.12 +0.4 39,378 - H281DRAFT_04891 0.12 +0.1 39,719 + H281DRAFT_04891 0.23 +0.6 39,719 + H281DRAFT_04891 0.23 +0.4 39,720 - H281DRAFT_04891 0.23 +0.0 39,720 - H281DRAFT_04891 0.23 +0.3 39,848 + H281DRAFT_04891 0.27 -0.8 39,966 - H281DRAFT_04891 0.31 -1.0
Or see this region's nucleotide sequence