Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04739

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04737 and H281DRAFT_04738 are separated by 94 nucleotidesH281DRAFT_04738 and H281DRAFT_04739 are separated by 102 nucleotidesH281DRAFT_04739 and H281DRAFT_04740 are separated by 322 nucleotides H281DRAFT_04737: H281DRAFT_04737 - glutaryl-CoA dehydrogenase, at 144,707 to 145,897 _04737 H281DRAFT_04738: H281DRAFT_04738 - transcriptional regulator, IclR family, at 145,992 to 146,777 _04738 H281DRAFT_04739: H281DRAFT_04739 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 146,880 to 147,713 _04739 H281DRAFT_04740: H281DRAFT_04740 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 148,036 to 149,400 _04740 Position (kb) 146 147 148Strain fitness (log2 ratio) -1 0 1 2at 145.902 kb on + strandat 145.902 kb on + strandat 145.902 kb on + strandat 145.903 kb on - strandat 145.984 kb on - strandat 146.164 kb on - strand, within H281DRAFT_04738at 146.165 kb on + strand, within H281DRAFT_04738at 146.184 kb on + strand, within H281DRAFT_04738at 146.317 kb on + strand, within H281DRAFT_04738at 146.318 kb on - strand, within H281DRAFT_04738at 146.364 kb on + strand, within H281DRAFT_04738at 146.365 kb on - strand, within H281DRAFT_04738at 146.457 kb on + strand, within H281DRAFT_04738at 146.457 kb on + strand, within H281DRAFT_04738at 146.458 kb on - strand, within H281DRAFT_04738at 146.593 kb on - strand, within H281DRAFT_04738at 146.876 kb on + strandat 146.876 kb on + strandat 146.876 kb on + strandat 146.877 kb on - strandat 146.900 kb on - strandat 146.942 kb on - strandat 146.942 kb on - strandat 147.152 kb on - strand, within H281DRAFT_04739at 147.161 kb on - strand, within H281DRAFT_04739at 147.191 kb on + strand, within H281DRAFT_04739at 147.226 kb on - strand, within H281DRAFT_04739at 147.287 kb on - strand, within H281DRAFT_04739at 147.315 kb on + strand, within H281DRAFT_04739at 147.322 kb on - strand, within H281DRAFT_04739at 147.327 kb on + strand, within H281DRAFT_04739at 147.441 kb on - strand, within H281DRAFT_04739at 147.715 kb on + strandat 147.728 kb on - strandat 147.733 kb on - strandat 147.733 kb on - strandat 147.790 kb on + strandat 147.791 kb on - strandat 147.791 kb on - strandat 147.791 kb on - strandat 147.893 kb on + strandat 147.932 kb on + strandat 148.016 kb on + strandat 148.016 kb on + strandat 148.016 kb on + strandat 148.065 kb on + strandat 148.186 kb on + strand, within H281DRAFT_04740at 148.187 kb on - strand, within H281DRAFT_04740at 148.187 kb on - strand, within H281DRAFT_04740at 148.187 kb on - strand, within H281DRAFT_04740at 148.460 kb on + strand, within H281DRAFT_04740at 148.673 kb on + strand, within H281DRAFT_04740at 148.673 kb on + strand, within H281DRAFT_04740at 148.674 kb on - strand, within H281DRAFT_04740

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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145,902 + -0.7
145,902 + +0.6
145,902 + +0.2
145,903 - +1.4
145,984 - -0.8
146,164 - H281DRAFT_04738 0.22 -0.1
146,165 + H281DRAFT_04738 0.22 -0.7
146,184 + H281DRAFT_04738 0.24 -1.5
146,317 + H281DRAFT_04738 0.41 -0.1
146,318 - H281DRAFT_04738 0.41 -0.7
146,364 + H281DRAFT_04738 0.47 +0.7
146,365 - H281DRAFT_04738 0.47 +1.1
146,457 + H281DRAFT_04738 0.59 +1.7
146,457 + H281DRAFT_04738 0.59 -0.2
146,458 - H281DRAFT_04738 0.59 +0.0
146,593 - H281DRAFT_04738 0.76 -1.1
146,876 + -0.6
146,876 + -0.2
146,876 + +1.8
146,877 - +0.9
146,900 - -0.6
146,942 - +0.1
146,942 - +0.7
147,152 - H281DRAFT_04739 0.33 -0.3
147,161 - H281DRAFT_04739 0.34 +1.1
147,191 + H281DRAFT_04739 0.37 +0.2
147,226 - H281DRAFT_04739 0.41 +0.3
147,287 - H281DRAFT_04739 0.49 +0.1
147,315 + H281DRAFT_04739 0.52 +0.3
147,322 - H281DRAFT_04739 0.53 +0.2
147,327 + H281DRAFT_04739 0.54 +0.1
147,441 - H281DRAFT_04739 0.67 +0.8
147,715 + +0.2
147,728 - +0.2
147,733 - +0.4
147,733 - +0.4
147,790 + +0.4
147,791 - +0.7
147,791 - +0.1
147,791 - +0.6
147,893 + +0.6
147,932 + +0.1
148,016 + -0.2
148,016 + -0.5
148,016 + +0.9
148,065 + -0.1
148,186 + H281DRAFT_04740 0.11 -0.8
148,187 - H281DRAFT_04740 0.11 +0.5
148,187 - H281DRAFT_04740 0.11 +0.6
148,187 - H281DRAFT_04740 0.11 -0.4
148,460 + H281DRAFT_04740 0.31 +0.2
148,673 + H281DRAFT_04740 0.47 +0.1
148,673 + H281DRAFT_04740 0.47 +0.0
148,674 - H281DRAFT_04740 0.47 -0.4

Or see this region's nucleotide sequence