Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04715 and H281DRAFT_04716 are separated by 272 nucleotides H281DRAFT_04716 and H281DRAFT_04717 are separated by 201 nucleotides H281DRAFT_04717 and H281DRAFT_04718 are separated by 19 nucleotides H281DRAFT_04718 and H281DRAFT_04719 are separated by 31 nucleotides
H281DRAFT_04715: H281DRAFT_04715 - hypothetical protein, at 129,266 to 129,730
_04715
H281DRAFT_04716: H281DRAFT_04716 - tRNA_Lys_TTT, at 130,003 to 130,078
_04716
H281DRAFT_04717: H281DRAFT_04717 - tol-pal system protein YbgF, at 130,280 to 131,029
_04717
H281DRAFT_04718: H281DRAFT_04718 - peptidoglycan-associated lipoprotein, at 131,049 to 131,558
_04718
H281DRAFT_04719: H281DRAFT_04719 - TolB protein, at 131,590 to 132,882
_04719
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 129.396 kb on + strand, within H281DRAFT_04715 at 129.397 kb on - strand, within H281DRAFT_04715 at 129.565 kb on + strand, within H281DRAFT_04715 at 129.640 kb on + strand, within H281DRAFT_04715 at 129.741 kb on + strand at 129.741 kb on + strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.912 kb on + strand at 129.913 kb on - strand at 129.913 kb on - strand at 129.913 kb on - strand at 129.921 kb on - strand at 129.970 kb on - strand at 130.144 kb on + strand at 130.144 kb on + strand at 130.144 kb on + strand at 130.145 kb on - strand at 130.145 kb on - strand at 130.145 kb on - strand at 130.281 kb on + strand at 130.282 kb on - strand at 130.282 kb on - strand at 130.489 kb on - strand, within H281DRAFT_04717 at 130.503 kb on + strand, within H281DRAFT_04717 at 130.524 kb on + strand, within H281DRAFT_04717 at 130.558 kb on - strand, within H281DRAFT_04717 at 130.731 kb on + strand, within H281DRAFT_04717 at 130.735 kb on - strand, within H281DRAFT_04717 at 131.050 kb on + strand at 131.051 kb on - strand at 131.051 kb on - strand at 131.051 kb on - strand at 131.344 kb on + strand, within H281DRAFT_04718 at 131.345 kb on - strand, within H281DRAFT_04718 at 131.345 kb on - strand, within H281DRAFT_04718 at 131.592 kb on - strand at 131.624 kb on - strand at 131.810 kb on + strand, within H281DRAFT_04719 at 131.842 kb on - strand, within H281DRAFT_04719 at 131.951 kb on + strand, within H281DRAFT_04719 at 131.988 kb on - strand, within H281DRAFT_04719
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 129,396 + H281DRAFT_04715 0.28 -0.4 129,397 - H281DRAFT_04715 0.28 +0.1 129,565 + H281DRAFT_04715 0.64 +1.9 129,640 + H281DRAFT_04715 0.80 -0.3 129,741 + -0.4 129,741 + +0.1 129,742 - -0.4 129,742 - -0.4 129,742 - -0.4 129,742 - -0.5 129,742 - +0.4 129,742 - +4.1 129,742 - +0.5 129,912 + -0.1 129,913 - +0.1 129,913 - +1.5 129,913 - -0.5 129,921 - -0.3 129,970 - -0.5 130,144 + -0.9 130,144 + +0.1 130,144 + -0.9 130,145 - +0.1 130,145 - +0.5 130,145 - -0.0 130,281 + +0.0 130,282 - -0.4 130,282 - +0.9 130,489 - H281DRAFT_04717 0.28 +0.8 130,503 + H281DRAFT_04717 0.30 -0.4 130,524 + H281DRAFT_04717 0.33 +1.8 130,558 - H281DRAFT_04717 0.37 +0.5 130,731 + H281DRAFT_04717 0.60 -1.4 130,735 - H281DRAFT_04717 0.61 -0.6 131,050 + -1.9 131,051 - +0.5 131,051 - +0.1 131,051 - +0.0 131,344 + H281DRAFT_04718 0.58 -0.5 131,345 - H281DRAFT_04718 0.58 -1.7 131,345 - H281DRAFT_04718 0.58 +1.1 131,592 - -0.4 131,624 - -1.3 131,810 + H281DRAFT_04719 0.17 -2.7 131,842 - H281DRAFT_04719 0.19 +0.1 131,951 + H281DRAFT_04719 0.28 +1.1 131,988 - H281DRAFT_04719 0.31 -2.3
Or see this region's nucleotide sequence