Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04482

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04480 and H281DRAFT_04481 are separated by 73 nucleotidesH281DRAFT_04481 and H281DRAFT_04482 overlap by 4 nucleotidesH281DRAFT_04482 and H281DRAFT_04483 are separated by 167 nucleotides H281DRAFT_04480: H281DRAFT_04480 - FAD/FMN-containing dehydrogenase, at 211,153 to 212,577 _04480 H281DRAFT_04481: H281DRAFT_04481 - Uncharacterized membrane protein, at 212,651 to 213,058 _04481 H281DRAFT_04482: H281DRAFT_04482 - NAD(P)H dehydrogenase (quinone), at 213,055 to 213,657 _04482 H281DRAFT_04483: H281DRAFT_04483 - tRNA-processing RNAse BN, at 213,825 to 215,135 _04483 Position (kb) 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1at 212.492 kb on + strandat 212.627 kb on + strandat 212.627 kb on + strandat 212.627 kb on + strandat 212.627 kb on + strandat 212.628 kb on - strandat 212.628 kb on - strandat 212.628 kb on - strandat 212.628 kb on - strandat 212.657 kb on - strandat 212.726 kb on - strand, within H281DRAFT_04481at 212.726 kb on - strand, within H281DRAFT_04481at 212.727 kb on + strand, within H281DRAFT_04481at 212.728 kb on - strand, within H281DRAFT_04481at 212.728 kb on - strand, within H281DRAFT_04481at 212.760 kb on - strand, within H281DRAFT_04481at 212.835 kb on + strandat 212.871 kb on + strand, within H281DRAFT_04481at 212.872 kb on - strand, within H281DRAFT_04481at 213.227 kb on + strand, within H281DRAFT_04482at 213.392 kb on + strandat 213.392 kb on + strand, within H281DRAFT_04482at 213.393 kb on - strand, within H281DRAFT_04482at 213.632 kb on + strandat 213.633 kb on - strandat 213.633 kb on - strandat 213.635 kb on + strandat 213.635 kb on + strandat 213.636 kb on - strandat 213.658 kb on - strandat 213.678 kb on + strandat 213.679 kb on - strandat 213.681 kb on + strandat 213.681 kb on + strandat 213.681 kb on + strandat 213.682 kb on - strandat 213.683 kb on + strandat 213.778 kb on + strandat 213.903 kb on - strandat 214.081 kb on - strand, within H281DRAFT_04483at 214.300 kb on - strand, within H281DRAFT_04483at 214.413 kb on + strand, within H281DRAFT_04483at 214.413 kb on + strand, within H281DRAFT_04483at 214.420 kb on - strand, within H281DRAFT_04483at 214.420 kb on - strand, within H281DRAFT_04483at 214.512 kb on + strand, within H281DRAFT_04483at 214.516 kb on - strand, within H281DRAFT_04483at 214.537 kb on - strand, within H281DRAFT_04483at 214.590 kb on + strand, within H281DRAFT_04483at 214.590 kb on + strand, within H281DRAFT_04483at 214.591 kb on - strand, within H281DRAFT_04483at 214.591 kb on - strand, within H281DRAFT_04483at 214.591 kb on - strand, within H281DRAFT_04483

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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212,492 + -3.3
212,627 + -0.3
212,627 + +0.2
212,627 + +0.8
212,627 + +0.4
212,628 - +0.3
212,628 - -0.1
212,628 - +0.0
212,628 - +1.0
212,657 - -1.4
212,726 - H281DRAFT_04481 0.18 -0.9
212,726 - H281DRAFT_04481 0.18 -0.9
212,727 + H281DRAFT_04481 0.19 -0.3
212,728 - H281DRAFT_04481 0.19 -0.2
212,728 - H281DRAFT_04481 0.19 -0.7
212,760 - H281DRAFT_04481 0.27 -0.4
212,835 + +0.6
212,871 + H281DRAFT_04481 0.54 -1.9
212,872 - H281DRAFT_04481 0.54 +0.2
213,227 + H281DRAFT_04482 0.29 -0.4
213,392 + -0.9
213,392 + H281DRAFT_04482 0.56 -0.2
213,393 - H281DRAFT_04482 0.56 +0.4
213,632 + -0.3
213,633 - +0.3
213,633 - +0.8
213,635 + -1.6
213,635 + +0.1
213,636 - -0.1
213,658 - +0.0
213,678 + +0.2
213,679 - -0.6
213,681 + +0.2
213,681 + +0.5
213,681 + -0.1
213,682 - -0.3
213,683 + +0.3
213,778 + -0.6
213,903 - +1.6
214,081 - H281DRAFT_04483 0.20 +0.4
214,300 - H281DRAFT_04483 0.36 +1.4
214,413 + H281DRAFT_04483 0.45 +0.5
214,413 + H281DRAFT_04483 0.45 +0.0
214,420 - H281DRAFT_04483 0.45 -0.4
214,420 - H281DRAFT_04483 0.45 +0.1
214,512 + H281DRAFT_04483 0.52 +0.2
214,516 - H281DRAFT_04483 0.53 +0.1
214,537 - H281DRAFT_04483 0.54 +0.4
214,590 + H281DRAFT_04483 0.58 +0.5
214,590 + H281DRAFT_04483 0.58 +0.7
214,591 - H281DRAFT_04483 0.58 +0.6
214,591 - H281DRAFT_04483 0.58 +0.4
214,591 - H281DRAFT_04483 0.58 -1.0

Or see this region's nucleotide sequence