Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03093 and H281DRAFT_03094 are separated by 86 nucleotides H281DRAFT_03094 and H281DRAFT_03095 are separated by 110 nucleotides H281DRAFT_03095 and H281DRAFT_03096 are separated by 6 nucleotides
H281DRAFT_03093: H281DRAFT_03093 - transcriptional regulator, MarR family, at 126,827 to 127,249
_03093
H281DRAFT_03094: H281DRAFT_03094 - transcriptional regulator, MarR family, at 127,336 to 127,755
_03094
H281DRAFT_03095: H281DRAFT_03095 - membrane fusion protein, multidrug efflux system, at 127,866 to 128,993
_03095
H281DRAFT_03096: H281DRAFT_03096 - drug resistance transporter, EmrB/QacA subfamily, at 129,000 to 130,571
_03096
Position (kb) 127
128
129 Strain fitness (log2 ratio) -1
0
1
2 at 127.103 kb on + strand at 127.271 kb on + strand at 127.272 kb on - strand at 127.272 kb on - strand at 127.301 kb on - strand at 127.387 kb on + strand, within H281DRAFT_03094 at 127.875 kb on - strand at 128.382 kb on - strand, within H281DRAFT_03095 at 128.455 kb on + strand, within H281DRAFT_03095 at 128.456 kb on - strand, within H281DRAFT_03095 at 129.493 kb on + strand, within H281DRAFT_03096 at 129.525 kb on + strand, within H281DRAFT_03096 at 129.525 kb on + strand, within H281DRAFT_03096
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 127,103 + +1.8 127,271 + +0.6 127,272 - +0.2 127,272 - +0.0 127,301 - -0.6 127,387 + H281DRAFT_03094 0.12 +0.3 127,875 - +0.2 128,382 - H281DRAFT_03095 0.46 +2.7 128,455 + H281DRAFT_03095 0.52 +0.9 128,456 - H281DRAFT_03095 0.52 -0.9 129,493 + H281DRAFT_03096 0.31 +0.2 129,525 + H281DRAFT_03096 0.33 +0.4 129,525 + H281DRAFT_03096 0.33 +0.9
Or see this region's nucleotide sequence