Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01896

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01895 and H281DRAFT_01896 are separated by 94 nucleotidesH281DRAFT_01896 and H281DRAFT_01897 overlap by 31 nucleotides H281DRAFT_01895: H281DRAFT_01895 - drug resistance transporter, EmrB/QacA subfamily, at 7,555 to 9,195 _01895 H281DRAFT_01896: H281DRAFT_01896 - EcsC protein family protein, at 9,290 to 10,132 _01896 H281DRAFT_01897: H281DRAFT_01897 - Acetyl esterase/lipase, at 10,102 to 11,064 _01897 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1at 8.304 kb on + strand, within H281DRAFT_01895at 8.304 kb on + strand, within H281DRAFT_01895at 8.304 kb on + strand, within H281DRAFT_01895at 8.304 kb on + strand, within H281DRAFT_01895at 8.305 kb on - strand, within H281DRAFT_01895at 8.308 kb on + strand, within H281DRAFT_01895at 8.390 kb on + strand, within H281DRAFT_01895at 8.609 kb on - strand, within H281DRAFT_01895at 8.612 kb on + strand, within H281DRAFT_01895at 8.634 kb on - strand, within H281DRAFT_01895at 8.636 kb on + strand, within H281DRAFT_01895at 8.637 kb on - strand, within H281DRAFT_01895at 8.751 kb on + strand, within H281DRAFT_01895at 8.815 kb on + strand, within H281DRAFT_01895at 8.904 kb on - strand, within H281DRAFT_01895at 8.906 kb on + strand, within H281DRAFT_01895at 8.907 kb on - strand, within H281DRAFT_01895at 8.957 kb on + strand, within H281DRAFT_01895at 8.957 kb on + strand, within H281DRAFT_01895at 8.957 kb on + strand, within H281DRAFT_01895at 8.957 kb on + strand, within H281DRAFT_01895at 8.958 kb on - strand, within H281DRAFT_01895at 8.979 kb on - strand, within H281DRAFT_01895at 8.979 kb on - strand, within H281DRAFT_01895at 8.980 kb on + strand, within H281DRAFT_01895at 8.980 kb on + strand, within H281DRAFT_01895at 8.980 kb on + strand, within H281DRAFT_01895at 8.980 kb on + strand, within H281DRAFT_01895at 8.981 kb on - strand, within H281DRAFT_01895at 8.981 kb on - strand, within H281DRAFT_01895at 8.981 kb on - strand, within H281DRAFT_01895at 9.013 kb on - strand, within H281DRAFT_01895at 9.195 kb on + strandat 9.195 kb on + strandat 9.195 kb on + strandat 9.195 kb on + strandat 9.214 kb on - strandat 9.269 kb on + strandat 9.269 kb on + strandat 9.269 kb on + strandat 9.270 kb on - strandat 9.270 kb on - strandat 9.595 kb on + strand, within H281DRAFT_01896at 9.596 kb on - strand, within H281DRAFT_01896at 9.689 kb on - strand, within H281DRAFT_01896at 9.800 kb on + strand, within H281DRAFT_01896at 9.800 kb on + strand, within H281DRAFT_01896at 10.391 kb on + strand, within H281DRAFT_01897at 10.392 kb on - strand, within H281DRAFT_01897at 10.410 kb on + strand, within H281DRAFT_01897at 10.411 kb on - strand, within H281DRAFT_01897at 10.411 kb on - strand, within H281DRAFT_01897at 10.440 kb on + strand, within H281DRAFT_01897at 10.658 kb on + strand, within H281DRAFT_01897at 10.659 kb on - strand, within H281DRAFT_01897at 10.721 kb on + strand, within H281DRAFT_01897at 10.802 kb on + strand, within H281DRAFT_01897at 10.802 kb on + strand, within H281DRAFT_01897at 10.802 kb on + strand, within H281DRAFT_01897at 10.803 kb on - strand, within H281DRAFT_01897at 10.823 kb on + strand, within H281DRAFT_01897at 10.823 kb on + strand, within H281DRAFT_01897at 10.824 kb on - strand, within H281DRAFT_01897at 10.824 kb on - strand, within H281DRAFT_01897at 10.824 kb on - strand, within H281DRAFT_01897at 10.824 kb on - strand, within H281DRAFT_01897at 11.099 kb on + strandat 11.099 kb on + strandat 11.099 kb on + strandat 11.099 kb on + strandat 11.100 kb on - strandat 11.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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8,304 + H281DRAFT_01895 0.46 +0.3
8,304 + H281DRAFT_01895 0.46 +0.1
8,304 + H281DRAFT_01895 0.46 -0.0
8,304 + H281DRAFT_01895 0.46 -0.3
8,305 - H281DRAFT_01895 0.46 -0.1
8,308 + H281DRAFT_01895 0.46 +0.3
8,390 + H281DRAFT_01895 0.51 -0.3
8,609 - H281DRAFT_01895 0.64 -0.6
8,612 + H281DRAFT_01895 0.64 +0.1
8,634 - H281DRAFT_01895 0.66 +0.0
8,636 + H281DRAFT_01895 0.66 +1.0
8,637 - H281DRAFT_01895 0.66 -1.5
8,751 + H281DRAFT_01895 0.73 -0.2
8,815 + H281DRAFT_01895 0.77 +0.3
8,904 - H281DRAFT_01895 0.82 -0.8
8,906 + H281DRAFT_01895 0.82 -0.2
8,907 - H281DRAFT_01895 0.82 -0.6
8,957 + H281DRAFT_01895 0.85 +0.1
8,957 + H281DRAFT_01895 0.85 -0.2
8,957 + H281DRAFT_01895 0.85 +1.4
8,957 + H281DRAFT_01895 0.85 +0.3
8,958 - H281DRAFT_01895 0.85 +0.4
8,979 - H281DRAFT_01895 0.87 +0.1
8,979 - H281DRAFT_01895 0.87 -0.3
8,980 + H281DRAFT_01895 0.87 +0.4
8,980 + H281DRAFT_01895 0.87 -0.5
8,980 + H281DRAFT_01895 0.87 -0.4
8,980 + H281DRAFT_01895 0.87 +0.3
8,981 - H281DRAFT_01895 0.87 +0.1
8,981 - H281DRAFT_01895 0.87 +0.3
8,981 - H281DRAFT_01895 0.87 -0.0
9,013 - H281DRAFT_01895 0.89 +1.2
9,195 + +1.5
9,195 + -0.3
9,195 + +0.1
9,195 + +0.3
9,214 - +0.3
9,269 + +0.6
9,269 + -1.9
9,269 + +1.2
9,270 - +0.5
9,270 - -0.7
9,595 + H281DRAFT_01896 0.36 +0.2
9,596 - H281DRAFT_01896 0.36 +1.7
9,689 - H281DRAFT_01896 0.47 +1.2
9,800 + H281DRAFT_01896 0.60 +0.8
9,800 + H281DRAFT_01896 0.60 -0.0
10,391 + H281DRAFT_01897 0.30 -1.2
10,392 - H281DRAFT_01897 0.30 +1.0
10,410 + H281DRAFT_01897 0.32 +0.3
10,411 - H281DRAFT_01897 0.32 -0.1
10,411 - H281DRAFT_01897 0.32 +1.0
10,440 + H281DRAFT_01897 0.35 +0.1
10,658 + H281DRAFT_01897 0.58 -0.8
10,659 - H281DRAFT_01897 0.58 -1.2
10,721 + H281DRAFT_01897 0.64 -0.6
10,802 + H281DRAFT_01897 0.73 +0.1
10,802 + H281DRAFT_01897 0.73 -0.4
10,802 + H281DRAFT_01897 0.73 -0.5
10,803 - H281DRAFT_01897 0.73 +0.2
10,823 + H281DRAFT_01897 0.75 +0.1
10,823 + H281DRAFT_01897 0.75 -0.3
10,824 - H281DRAFT_01897 0.75 +1.2
10,824 - H281DRAFT_01897 0.75 -0.6
10,824 - H281DRAFT_01897 0.75 -0.7
10,824 - H281DRAFT_01897 0.75 +0.4
11,099 + -0.2
11,099 + +1.3
11,099 + +0.4
11,099 + -0.7
11,100 - +0.7
11,100 - +0.1

Or see this region's nucleotide sequence