Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01550 and H281DRAFT_01551 are separated by 36 nucleotides H281DRAFT_01551 and H281DRAFT_01552 are separated by 50 nucleotides H281DRAFT_01552 and H281DRAFT_01553 are separated by 192 nucleotides
H281DRAFT_01550: H281DRAFT_01550 - membrane fusion protein, multidrug efflux system, at 423,042 to 424,289
_01550
H281DRAFT_01551: H281DRAFT_01551 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 424,326 to 425,819
_01551
H281DRAFT_01552: H281DRAFT_01552 - DNA-binding transcriptional regulator, MarR family, at 425,870 to 426,307
_01552
H281DRAFT_01553: H281DRAFT_01553 - Uncharacterized conserved protein, DUF1330 family, at 426,500 to 426,787
_01553
Position (kb) 424
425
426 Strain fitness (log2 ratio) -1
0
1 at 423.412 kb on + strand, within H281DRAFT_01550 at 423.893 kb on - strand, within H281DRAFT_01550 at 423.893 kb on - strand, within H281DRAFT_01550 at 423.895 kb on + strand, within H281DRAFT_01550 at 424.100 kb on - strand, within H281DRAFT_01550 at 424.100 kb on - strand, within H281DRAFT_01550 at 424.142 kb on - strand, within H281DRAFT_01550 at 424.144 kb on + strand, within H281DRAFT_01550 at 424.703 kb on + strand, within H281DRAFT_01551 at 424.847 kb on - strand, within H281DRAFT_01551 at 425.369 kb on - strand, within H281DRAFT_01551 at 425.467 kb on + strand, within H281DRAFT_01551 at 425.681 kb on + strand at 425.682 kb on - strand at 426.107 kb on + strand, within H281DRAFT_01552 at 426.298 kb on - strand at 426.350 kb on + strand at 426.501 kb on + strand at 426.501 kb on + strand at 426.775 kb on + strand at 426.777 kb on + strand at 426.777 kb on + strand at 426.777 kb on + strand at 426.778 kb on - strand at 426.778 kb on - strand at 426.778 kb on - strand at 426.778 kb on - strand at 426.792 kb on + strand at 426.792 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 423,412 + H281DRAFT_01550 0.30 -0.8 423,893 - H281DRAFT_01550 0.68 +0.8 423,893 - H281DRAFT_01550 0.68 -0.7 423,895 + H281DRAFT_01550 0.68 +0.3 424,100 - H281DRAFT_01550 0.85 +0.2 424,100 - H281DRAFT_01550 0.85 +0.1 424,142 - H281DRAFT_01550 0.88 -0.4 424,144 + H281DRAFT_01550 0.88 -0.3 424,703 + H281DRAFT_01551 0.25 -1.7 424,847 - H281DRAFT_01551 0.35 +0.1 425,369 - H281DRAFT_01551 0.70 -0.4 425,467 + H281DRAFT_01551 0.76 -0.7 425,681 + +0.0 425,682 - +1.6 426,107 + H281DRAFT_01552 0.54 +0.2 426,298 - +0.4 426,350 + -0.1 426,501 + +0.4 426,501 + -0.3 426,775 + +0.2 426,777 + -1.3 426,777 + +0.6 426,777 + -0.2 426,778 - -0.8 426,778 - +0.9 426,778 - -0.0 426,778 - +0.3 426,792 + -0.1 426,792 + -0.3
Or see this region's nucleotide sequence