Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01176

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01174 and H281DRAFT_01175 are separated by 182 nucleotidesH281DRAFT_01175 and H281DRAFT_01176 are separated by 163 nucleotidesH281DRAFT_01176 and H281DRAFT_01177 are separated by 4 nucleotides H281DRAFT_01174: H281DRAFT_01174 - Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase), at 8,200 to 9,261 _01174 H281DRAFT_01175: H281DRAFT_01175 - hypothetical protein, at 9,444 to 9,623 _01175 H281DRAFT_01176: H281DRAFT_01176 - fatty-acyl-CoA synthase, at 9,787 to 11,442 _01176 H281DRAFT_01177: H281DRAFT_01177 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 11,447 to 12,685 _01177 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -2 -1 0 1at 8.823 kb on - strand, within H281DRAFT_01174at 8.866 kb on + strand, within H281DRAFT_01174at 8.866 kb on + strand, within H281DRAFT_01174at 8.977 kb on - strand, within H281DRAFT_01174at 8.977 kb on - strand, within H281DRAFT_01174at 9.113 kb on + strand, within H281DRAFT_01174at 9.114 kb on - strand, within H281DRAFT_01174at 9.402 kb on - strandat 9.436 kb on - strandat 9.436 kb on - strandat 9.850 kb on + strandat 10.005 kb on + strand, within H281DRAFT_01176at 10.028 kb on - strand, within H281DRAFT_01176at 10.028 kb on - strand, within H281DRAFT_01176at 10.030 kb on + strand, within H281DRAFT_01176at 10.100 kb on - strand, within H281DRAFT_01176at 10.291 kb on + strand, within H281DRAFT_01176at 10.293 kb on + strand, within H281DRAFT_01176at 10.293 kb on + strand, within H281DRAFT_01176at 10.293 kb on + strand, within H281DRAFT_01176at 10.294 kb on - strand, within H281DRAFT_01176at 10.294 kb on - strand, within H281DRAFT_01176at 10.614 kb on + strandat 11.446 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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8,823 - H281DRAFT_01174 0.59 +0.4
8,866 + H281DRAFT_01174 0.63 +0.9
8,866 + H281DRAFT_01174 0.63 +1.2
8,977 - H281DRAFT_01174 0.73 +0.8
8,977 - H281DRAFT_01174 0.73 -1.8
9,113 + H281DRAFT_01174 0.86 -0.6
9,114 - H281DRAFT_01174 0.86 +0.7
9,402 - +0.2
9,436 - +0.2
9,436 - +0.9
9,850 + +0.9
10,005 + H281DRAFT_01176 0.13 -0.2
10,028 - H281DRAFT_01176 0.15 -0.4
10,028 - H281DRAFT_01176 0.15 -1.1
10,030 + H281DRAFT_01176 0.15 +0.9
10,100 - H281DRAFT_01176 0.19 -0.4
10,291 + H281DRAFT_01176 0.30 +0.0
10,293 + H281DRAFT_01176 0.31 +0.3
10,293 + H281DRAFT_01176 0.31 -0.3
10,293 + H281DRAFT_01176 0.31 -0.7
10,294 - H281DRAFT_01176 0.31 -0.1
10,294 - H281DRAFT_01176 0.31 -2.6
10,614 + -1.1
11,446 + -1.0

Or see this region's nucleotide sequence