Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01074

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01073 and H281DRAFT_01074 are separated by 174 nucleotidesH281DRAFT_01074 and H281DRAFT_01075 are separated by 106 nucleotides H281DRAFT_01073: H281DRAFT_01073 - DNA-binding transcriptional regulator, LysR family, at 1,205,567 to 1,206,490 _01073 H281DRAFT_01074: H281DRAFT_01074 - catechol 1,2-dioxygenase, at 1,206,665 to 1,207,600 _01074 H281DRAFT_01075: H281DRAFT_01075 - benzoate 1,2-dioxygenase, alpha subunit, at 1,207,707 to 1,209,065 _01075 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -1 0 1at 1205.725 kb on - strand, within H281DRAFT_01073at 1205.725 kb on - strand, within H281DRAFT_01073at 1205.830 kb on - strand, within H281DRAFT_01073at 1205.830 kb on - strand, within H281DRAFT_01073at 1205.830 kb on - strand, within H281DRAFT_01073at 1206.384 kb on - strand, within H281DRAFT_01073at 1206.384 kb on - strand, within H281DRAFT_01073at 1206.507 kb on - strandat 1206.554 kb on + strandat 1206.554 kb on + strandat 1206.554 kb on + strandat 1206.554 kb on + strandat 1206.554 kb on + strandat 1206.554 kb on + strandat 1206.555 kb on - strandat 1206.555 kb on - strandat 1206.555 kb on - strandat 1206.555 kb on - strandat 1206.992 kb on + strand, within H281DRAFT_01074at 1206.992 kb on + strand, within H281DRAFT_01074at 1206.993 kb on - strand, within H281DRAFT_01074at 1207.360 kb on + strand, within H281DRAFT_01074at 1207.827 kb on + strandat 1207.911 kb on + strand, within H281DRAFT_01075at 1207.912 kb on - strand, within H281DRAFT_01075at 1208.184 kb on + strand, within H281DRAFT_01075at 1208.324 kb on + strand, within H281DRAFT_01075

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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1,205,725 - H281DRAFT_01073 0.17 +0.4
1,205,725 - H281DRAFT_01073 0.17 +0.4
1,205,830 - H281DRAFT_01073 0.28 +0.1
1,205,830 - H281DRAFT_01073 0.28 -0.3
1,205,830 - H281DRAFT_01073 0.28 -0.2
1,206,384 - H281DRAFT_01073 0.88 +0.1
1,206,384 - H281DRAFT_01073 0.88 -0.2
1,206,507 - +0.5
1,206,554 + -0.8
1,206,554 + -0.7
1,206,554 + -0.3
1,206,554 + -0.0
1,206,554 + -0.5
1,206,554 + +0.1
1,206,555 - +0.4
1,206,555 - -0.1
1,206,555 - -0.7
1,206,555 - -0.4
1,206,992 + H281DRAFT_01074 0.35 +0.3
1,206,992 + H281DRAFT_01074 0.35 -1.0
1,206,993 - H281DRAFT_01074 0.35 -1.0
1,207,360 + H281DRAFT_01074 0.74 -0.4
1,207,827 + -0.0
1,207,911 + H281DRAFT_01075 0.15 -0.3
1,207,912 - H281DRAFT_01075 0.15 -0.6
1,208,184 + H281DRAFT_01075 0.35 +0.7
1,208,324 + H281DRAFT_01075 0.45 -1.0

Or see this region's nucleotide sequence