Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00944

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00943 and H281DRAFT_00944 are separated by 670 nucleotidesH281DRAFT_00944 and H281DRAFT_00945 are separated by 29 nucleotides H281DRAFT_00943: H281DRAFT_00943 - mannose-6-phosphate isomerase, type 2, at 1,047,467 to 1,049,056 _00943 H281DRAFT_00944: H281DRAFT_00944 - putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase, at 1,049,727 to 1,051,124 _00944 H281DRAFT_00945: H281DRAFT_00945 - UDP-glucose dehydrogenase, at 1,051,154 to 1,052,602 _00945 Position (kb) 1049 1050 1051 1052Strain fitness (log2 ratio) -1 0 1 2at 1049.269 kb on - strandat 1049.470 kb on - strandat 1049.652 kb on - strandat 1049.895 kb on + strand, within H281DRAFT_00944at 1050.077 kb on - strand, within H281DRAFT_00944at 1050.304 kb on - strand, within H281DRAFT_00944at 1050.669 kb on - strand, within H281DRAFT_00944at 1050.900 kb on + strand, within H281DRAFT_00944at 1050.900 kb on + strand, within H281DRAFT_00944at 1050.900 kb on + strand, within H281DRAFT_00944at 1050.901 kb on - strand, within H281DRAFT_00944at 1050.901 kb on - strand, within H281DRAFT_00944at 1050.901 kb on - strand, within H281DRAFT_00944at 1050.922 kb on - strand, within H281DRAFT_00944at 1050.922 kb on - strand, within H281DRAFT_00944at 1051.038 kb on + strandat 1051.039 kb on - strandat 1051.120 kb on - strandat 1051.148 kb on + strandat 1051.151 kb on + strandat 1051.151 kb on + strandat 1051.151 kb on + strandat 1051.152 kb on - strandat 1051.727 kb on + strand, within H281DRAFT_00945at 1051.728 kb on - strand, within H281DRAFT_00945at 1051.763 kb on + strand, within H281DRAFT_00945at 1051.796 kb on + strand, within H281DRAFT_00945at 1051.797 kb on - strand, within H281DRAFT_00945at 1051.832 kb on + strand, within H281DRAFT_00945

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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1,049,269 - +0.1
1,049,470 - +0.2
1,049,652 - -0.8
1,049,895 + H281DRAFT_00944 0.12 +0.8
1,050,077 - H281DRAFT_00944 0.25 -0.6
1,050,304 - H281DRAFT_00944 0.41 +2.6
1,050,669 - H281DRAFT_00944 0.67 -0.2
1,050,900 + H281DRAFT_00944 0.84 -0.3
1,050,900 + H281DRAFT_00944 0.84 +0.5
1,050,900 + H281DRAFT_00944 0.84 -0.6
1,050,901 - H281DRAFT_00944 0.84 +0.3
1,050,901 - H281DRAFT_00944 0.84 -0.1
1,050,901 - H281DRAFT_00944 0.84 +0.2
1,050,922 - H281DRAFT_00944 0.85 +0.0
1,050,922 - H281DRAFT_00944 0.85 +0.5
1,051,038 + +1.1
1,051,039 - +1.1
1,051,120 - +0.4
1,051,148 + -1.3
1,051,151 + +0.9
1,051,151 + -0.5
1,051,151 + +0.8
1,051,152 - -0.2
1,051,727 + H281DRAFT_00945 0.40 +0.7
1,051,728 - H281DRAFT_00945 0.40 -0.5
1,051,763 + H281DRAFT_00945 0.42 -0.2
1,051,796 + H281DRAFT_00945 0.44 +0.0
1,051,797 - H281DRAFT_00945 0.44 +0.0
1,051,832 + H281DRAFT_00945 0.47 +0.1

Or see this region's nucleotide sequence