Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00397

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00395 and H281DRAFT_00397 are separated by 450 nucleotidesH281DRAFT_00397 and H281DRAFT_00398 are separated by 557 nucleotides H281DRAFT_00395: H281DRAFT_00395 - hydroxymethylpyrimidine synthase, at 438,100 to 440,031 _00395 H281DRAFT_00397: H281DRAFT_00397 - GreA/GreB family elongation factor, at 440,482 to 440,901 _00397 H281DRAFT_00398: H281DRAFT_00398 - hypothetical protein, at 441,459 to 442,313 _00398 Position (kb) 440 441Strain fitness (log2 ratio) -2 -1 0 1at 439.568 kb on + strand, within H281DRAFT_00395at 439.568 kb on + strand, within H281DRAFT_00395at 439.604 kb on + strand, within H281DRAFT_00395at 439.947 kb on - strandat 440.178 kb on + strandat 440.251 kb on + strandat 440.405 kb on - strandat 440.415 kb on + strandat 440.415 kb on + strandat 440.415 kb on + strandat 440.416 kb on - strandat 440.461 kb on + strandat 440.483 kb on + strandat 440.782 kb on + strand, within H281DRAFT_00397at 440.871 kb on - strandat 441.277 kb on - strandat 441.277 kb on - strandat 441.409 kb on + strandat 441.410 kb on - strandat 441.619 kb on - strand, within H281DRAFT_00398at 441.638 kb on + strand, within H281DRAFT_00398at 441.638 kb on + strand, within H281DRAFT_00398at 441.639 kb on - strand, within H281DRAFT_00398at 441.822 kb on + strand, within H281DRAFT_00398

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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439,568 + H281DRAFT_00395 0.76 -0.8
439,568 + H281DRAFT_00395 0.76 -1.7
439,604 + H281DRAFT_00395 0.78 -1.8
439,947 - -0.4
440,178 + -0.6
440,251 + -1.0
440,405 - -0.1
440,415 + +1.3
440,415 + +0.3
440,415 + -0.3
440,416 - +0.0
440,461 + -1.8
440,483 + -0.4
440,782 + H281DRAFT_00397 0.71 +0.7
440,871 - +1.0
441,277 - +0.8
441,277 - +0.6
441,409 + -0.5
441,410 - -0.0
441,619 - H281DRAFT_00398 0.19 -0.5
441,638 + H281DRAFT_00398 0.21 -0.1
441,638 + H281DRAFT_00398 0.21 +0.6
441,639 - H281DRAFT_00398 0.21 -0.2
441,822 + H281DRAFT_00398 0.42 -0.4

Or see this region's nucleotide sequence