Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00178

Experiment: LB in EcoFAB_3.5mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00177 and H281DRAFT_00178 are separated by 193 nucleotidesH281DRAFT_00178 and H281DRAFT_00179 are separated by 92 nucleotides H281DRAFT_00177: H281DRAFT_00177 - transcriptional regulator, LysR family, at 190,952 to 191,863 _00177 H281DRAFT_00178: H281DRAFT_00178 - agmatinase, at 192,057 to 193,046 _00178 H281DRAFT_00179: H281DRAFT_00179 - nucleobase:cation symporter-1, NCS1 family, at 193,139 to 194,455 _00179 Position (kb) 192 193 194Strain fitness (log2 ratio) -1 0 1 2at 191.069 kb on + strand, within H281DRAFT_00177at 191.069 kb on + strand, within H281DRAFT_00177at 191.070 kb on - strand, within H281DRAFT_00177at 191.070 kb on - strand, within H281DRAFT_00177at 191.244 kb on + strand, within H281DRAFT_00177at 191.244 kb on + strand, within H281DRAFT_00177at 191.245 kb on - strand, within H281DRAFT_00177at 191.364 kb on + strand, within H281DRAFT_00177at 191.364 kb on + strand, within H281DRAFT_00177at 191.364 kb on + strand, within H281DRAFT_00177at 191.429 kb on + strand, within H281DRAFT_00177at 191.515 kb on + strand, within H281DRAFT_00177at 191.515 kb on + strand, within H281DRAFT_00177at 191.515 kb on + strand, within H281DRAFT_00177at 191.516 kb on - strand, within H281DRAFT_00177at 191.917 kb on - strandat 192.062 kb on + strandat 192.295 kb on - strand, within H281DRAFT_00178at 192.295 kb on - strand, within H281DRAFT_00178at 192.370 kb on - strand, within H281DRAFT_00178at 192.418 kb on + strand, within H281DRAFT_00178at 192.419 kb on - strand, within H281DRAFT_00178at 192.419 kb on - strand, within H281DRAFT_00178at 192.419 kb on - strand, within H281DRAFT_00178at 192.660 kb on + strand, within H281DRAFT_00178at 192.789 kb on + strand, within H281DRAFT_00178at 192.789 kb on + strand, within H281DRAFT_00178at 192.790 kb on - strand, within H281DRAFT_00178at 192.791 kb on + strand, within H281DRAFT_00178at 193.121 kb on + strandat 193.157 kb on - strandat 193.179 kb on + strandat 193.179 kb on + strandat 193.179 kb on - strandat 193.252 kb on - strandat 193.350 kb on - strand, within H281DRAFT_00179at 193.456 kb on + strand, within H281DRAFT_00179at 193.456 kb on + strand, within H281DRAFT_00179at 193.456 kb on + strand, within H281DRAFT_00179at 193.457 kb on - strand, within H281DRAFT_00179at 193.674 kb on + strand, within H281DRAFT_00179at 193.675 kb on - strand, within H281DRAFT_00179at 193.675 kb on - strand, within H281DRAFT_00179at 193.770 kb on + strand, within H281DRAFT_00179

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
remove
191,069 + H281DRAFT_00177 0.13 +0.2
191,069 + H281DRAFT_00177 0.13 +0.5
191,070 - H281DRAFT_00177 0.13 -1.2
191,070 - H281DRAFT_00177 0.13 -0.4
191,244 + H281DRAFT_00177 0.32 +0.1
191,244 + H281DRAFT_00177 0.32 +0.8
191,245 - H281DRAFT_00177 0.32 -0.6
191,364 + H281DRAFT_00177 0.45 +0.2
191,364 + H281DRAFT_00177 0.45 +0.0
191,364 + H281DRAFT_00177 0.45 -0.5
191,429 + H281DRAFT_00177 0.52 +0.1
191,515 + H281DRAFT_00177 0.62 +0.1
191,515 + H281DRAFT_00177 0.62 +0.4
191,515 + H281DRAFT_00177 0.62 +1.6
191,516 - H281DRAFT_00177 0.62 -0.3
191,917 - -0.6
192,062 + +0.7
192,295 - H281DRAFT_00178 0.24 -0.8
192,295 - H281DRAFT_00178 0.24 +0.1
192,370 - H281DRAFT_00178 0.32 -0.3
192,418 + H281DRAFT_00178 0.36 +1.2
192,419 - H281DRAFT_00178 0.37 +0.4
192,419 - H281DRAFT_00178 0.37 +0.4
192,419 - H281DRAFT_00178 0.37 +0.3
192,660 + H281DRAFT_00178 0.61 +0.1
192,789 + H281DRAFT_00178 0.74 -0.4
192,789 + H281DRAFT_00178 0.74 -1.0
192,790 - H281DRAFT_00178 0.74 -0.0
192,791 + H281DRAFT_00178 0.74 +0.2
193,121 + -0.7
193,157 - +1.7
193,179 + +0.1
193,179 + +0.5
193,179 - +0.3
193,252 - +1.8
193,350 - H281DRAFT_00179 0.16 +1.9
193,456 + H281DRAFT_00179 0.24 -0.3
193,456 + H281DRAFT_00179 0.24 -0.0
193,456 + H281DRAFT_00179 0.24 -0.0
193,457 - H281DRAFT_00179 0.24 +0.2
193,674 + H281DRAFT_00179 0.41 -0.5
193,675 - H281DRAFT_00179 0.41 -0.3
193,675 - H281DRAFT_00179 0.41 +0.7
193,770 + H281DRAFT_00179 0.48 +0.5

Or see this region's nucleotide sequence