Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00130

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00129 and H281DRAFT_00130 are separated by 88 nucleotidesH281DRAFT_00130 and H281DRAFT_00131 are separated by 203 nucleotides H281DRAFT_00129: H281DRAFT_00129 - phosphatidylglycerol:prolipoprotein diacylglycerol transferase, at 136,944 to 137,843 _00129 H281DRAFT_00130: H281DRAFT_00130 - Predicted secreted protein, at 137,932 to 138,660 _00130 H281DRAFT_00131: H281DRAFT_00131 - Predicted RNA-binding protein, contains PUA-like domain, at 138,864 to 139,322 _00131 Position (kb) 137 138 139Strain fitness (log2 ratio) -1 0 1at 138.072 kb on + strand, within H281DRAFT_00130at 138.444 kb on + strand, within H281DRAFT_00130at 138.744 kb on + strandat 138.774 kb on + strandat 139.058 kb on + strand, within H281DRAFT_00131at 139.059 kb on - strand, within H281DRAFT_00131at 139.066 kb on + strand, within H281DRAFT_00131at 139.066 kb on + strand, within H281DRAFT_00131at 139.066 kb on + strand, within H281DRAFT_00131at 139.067 kb on - strand, within H281DRAFT_00131at 139.067 kb on - strand, within H281DRAFT_00131at 139.069 kb on + strand, within H281DRAFT_00131at 139.069 kb on + strand, within H281DRAFT_00131at 139.070 kb on - strand, within H281DRAFT_00131at 139.119 kb on + strand, within H281DRAFT_00131at 139.120 kb on - strand, within H281DRAFT_00131at 139.120 kb on - strandat 139.165 kb on + strand, within H281DRAFT_00131at 139.166 kb on - strand, within H281DRAFT_00131at 139.222 kb on + strand, within H281DRAFT_00131at 139.223 kb on - strand, within H281DRAFT_00131at 139.385 kb on - strandat 139.404 kb on + strandat 139.514 kb on + strandat 139.556 kb on + strandat 139.556 kb on + strandat 139.556 kb on + strandat 139.556 kb on + strandat 139.556 kb on + strandat 139.558 kb on + strandat 139.558 kb on + strandat 139.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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138,072 + H281DRAFT_00130 0.19 +0.9
138,444 + H281DRAFT_00130 0.70 +0.7
138,744 + +1.2
138,774 + -0.4
139,058 + H281DRAFT_00131 0.42 -0.2
139,059 - H281DRAFT_00131 0.42 -1.2
139,066 + H281DRAFT_00131 0.44 +0.3
139,066 + H281DRAFT_00131 0.44 +0.4
139,066 + H281DRAFT_00131 0.44 -0.4
139,067 - H281DRAFT_00131 0.44 -0.8
139,067 - H281DRAFT_00131 0.44 -0.2
139,069 + H281DRAFT_00131 0.45 -0.5
139,069 + H281DRAFT_00131 0.45 +0.6
139,070 - H281DRAFT_00131 0.45 +0.2
139,119 + H281DRAFT_00131 0.56 +0.3
139,120 - H281DRAFT_00131 0.56 +1.2
139,120 - -0.6
139,165 + H281DRAFT_00131 0.66 -0.2
139,166 - H281DRAFT_00131 0.66 +0.1
139,222 + H281DRAFT_00131 0.78 +0.0
139,223 - H281DRAFT_00131 0.78 +0.6
139,385 - -0.1
139,404 + -0.4
139,514 + -0.0
139,556 + +1.1
139,556 + +0.4
139,556 + -0.1
139,556 + -0.1
139,556 + +0.2
139,558 + +0.4
139,558 + -0.1
139,559 - -1.3

Or see this region's nucleotide sequence