Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21470

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21465 and BWI76_RS21470 overlap by 4 nucleotidesBWI76_RS21470 and BWI76_RS21475 are separated by 68 nucleotides BWI76_RS21465: BWI76_RS21465 - bifunctional chorismate mutase/prephenate dehydratase, at 4,496,591 to 4,497,751 _RS21465 BWI76_RS21470: BWI76_RS21470 - gluconolaconase, at 4,497,748 to 4,498,620 _RS21470 BWI76_RS21475: BWI76_RS21475 - bifunctional chorismate mutase/prephenate dehydrogenase, at 4,498,689 to 4,499,810 _RS21475 Position (kb) 4497 4498 4499Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4497.319 kb on + strand, within BWI76_RS21465at 4497.341 kb on + strand, within BWI76_RS21465at 4497.349 kb on - strand, within BWI76_RS21465at 4497.354 kb on - strand, within BWI76_RS21465at 4497.634 kb on - strand, within BWI76_RS21465at 4497.644 kb on - strandat 4497.655 kb on + strandat 4497.709 kb on - strandat 4497.709 kb on - strandat 4497.888 kb on - strand, within BWI76_RS21470at 4498.016 kb on + strand, within BWI76_RS21470at 4498.440 kb on + strand, within BWI76_RS21470at 4498.521 kb on + strand, within BWI76_RS21470at 4498.563 kb on + strandat 4498.730 kb on - strandat 4498.908 kb on - strand, within BWI76_RS21475at 4499.099 kb on - strand, within BWI76_RS21475at 4499.118 kb on - strand, within BWI76_RS21475at 4499.220 kb on + strand, within BWI76_RS21475at 4499.591 kb on - strand, within BWI76_RS21475

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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4,497,319 + BWI76_RS21465 0.63 -3.4
4,497,341 + BWI76_RS21465 0.65 -3.1
4,497,349 - BWI76_RS21465 0.65 -3.8
4,497,354 - BWI76_RS21465 0.66 -5.1
4,497,634 - BWI76_RS21465 0.90 -4.2
4,497,644 - -1.3
4,497,655 + -2.0
4,497,709 - -1.1
4,497,709 - -1.7
4,497,888 - BWI76_RS21470 0.16 +1.1
4,498,016 + BWI76_RS21470 0.31 +0.6
4,498,440 + BWI76_RS21470 0.79 +0.9
4,498,521 + BWI76_RS21470 0.89 +0.1
4,498,563 + -1.1
4,498,730 - -1.1
4,498,908 - BWI76_RS21475 0.20 -3.9
4,499,099 - BWI76_RS21475 0.37 -2.5
4,499,118 - BWI76_RS21475 0.38 -5.5
4,499,220 + BWI76_RS21475 0.47 -4.5
4,499,591 - BWI76_RS21475 0.80 -3.6

Or see this region's nucleotide sequence