Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07885

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07875 and BWI76_RS07880 are separated by 38 nucleotidesBWI76_RS07880 and BWI76_RS07885 are separated by 11 nucleotidesBWI76_RS07885 and BWI76_RS07890 overlap by 1 nucleotidesBWI76_RS07890 and BWI76_RS07895 overlap by 4 nucleotides BWI76_RS07875: BWI76_RS07875 - dihydrofolate reductase, at 1,671,520 to 1,672,548 _RS07875 BWI76_RS07880: BWI76_RS07880 - PfkB domain-containing protein, at 1,672,587 to 1,673,531 _RS07880 BWI76_RS07885: BWI76_RS07885 - sugar ABC transporter permease, at 1,673,543 to 1,674,544 _RS07885 BWI76_RS07890: BWI76_RS07890 - putative ABC-type sugar transport system permease component, at 1,674,544 to 1,675,530 _RS07890 BWI76_RS07895: BWI76_RS07895 - sugar ABC transporter ATPase, at 1,675,527 to 1,677,080 _RS07895 Position (kb) 1673 1674 1675Strain fitness (log2 ratio) -1 0 1 2at 1672.789 kb on + strand, within BWI76_RS07880at 1672.994 kb on + strand, within BWI76_RS07880at 1673.002 kb on - strand, within BWI76_RS07880at 1673.186 kb on + strand, within BWI76_RS07880at 1673.186 kb on + strand, within BWI76_RS07880at 1673.278 kb on - strand, within BWI76_RS07880at 1673.524 kb on - strandat 1673.680 kb on + strand, within BWI76_RS07885at 1673.754 kb on + strand, within BWI76_RS07885at 1673.928 kb on - strand, within BWI76_RS07885at 1674.113 kb on + strand, within BWI76_RS07885at 1674.667 kb on + strand, within BWI76_RS07890at 1674.667 kb on + strand, within BWI76_RS07890at 1674.667 kb on + strand, within BWI76_RS07890at 1674.675 kb on - strand, within BWI76_RS07890at 1674.675 kb on - strand, within BWI76_RS07890at 1674.897 kb on - strandat 1675.166 kb on - strand, within BWI76_RS07890at 1675.234 kb on - strand, within BWI76_RS07890at 1675.280 kb on - strand, within BWI76_RS07890at 1675.309 kb on + strand, within BWI76_RS07890at 1675.347 kb on + strand, within BWI76_RS07890at 1675.355 kb on - strand, within BWI76_RS07890at 1675.431 kb on + strand, within BWI76_RS07890

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,672,789 + BWI76_RS07880 0.21 -0.1
1,672,994 + BWI76_RS07880 0.43 -0.3
1,673,002 - BWI76_RS07880 0.44 -0.2
1,673,186 + BWI76_RS07880 0.63 +0.2
1,673,186 + BWI76_RS07880 0.63 -0.6
1,673,278 - BWI76_RS07880 0.73 +0.3
1,673,524 - +2.1
1,673,680 + BWI76_RS07885 0.14 +1.1
1,673,754 + BWI76_RS07885 0.21 -0.1
1,673,928 - BWI76_RS07885 0.38 -0.2
1,674,113 + BWI76_RS07885 0.57 -0.4
1,674,667 + BWI76_RS07890 0.12 -0.8
1,674,667 + BWI76_RS07890 0.12 -0.2
1,674,667 + BWI76_RS07890 0.12 +0.7
1,674,675 - BWI76_RS07890 0.13 -0.4
1,674,675 - BWI76_RS07890 0.13 -0.6
1,674,897 - +0.1
1,675,166 - BWI76_RS07890 0.63 -0.3
1,675,234 - BWI76_RS07890 0.70 -0.2
1,675,280 - BWI76_RS07890 0.75 +0.5
1,675,309 + BWI76_RS07890 0.78 -0.5
1,675,347 + BWI76_RS07890 0.81 -0.5
1,675,355 - BWI76_RS07890 0.82 -0.3
1,675,431 + BWI76_RS07890 0.90 +0.2

Or see this region's nucleotide sequence