Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4676 and Ac3H11_4677 overlap by 4 nucleotides Ac3H11_4677 and Ac3H11_4678 are separated by 81 nucleotides Ac3H11_4678 and Ac3H11_4679 are separated by 122 nucleotides
Ac3H11_4676 - Cobalt-zinc-cadmium resistance protein, at 284,685 to 285,635
_4676
Ac3H11_4677 - D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1), at 285,632 to 286,084
_4677
Ac3H11_4678 - membrane protein, putative, at 286,166 to 286,906
_4678
Ac3H11_4679 - probable outer membrane secretion protein - Rhodobacter capsulatus, at 287,029 to 288,759
_4679
Position (kb) 285
286
287 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 284.642 kb on + strand at 284.642 kb on + strand at 284.642 kb on + strand at 284.937 kb on + strand, within Ac3H11_4676 at 285.642 kb on + strand at 285.642 kb on + strand at 285.642 kb on + strand at 285.642 kb on + strand at 285.642 kb on + strand at 285.643 kb on - strand at 285.643 kb on - strand at 285.947 kb on + strand, within Ac3H11_4677 at 285.947 kb on + strand, within Ac3H11_4677 at 285.948 kb on - strand, within Ac3H11_4677 at 285.948 kb on - strand, within Ac3H11_4677 at 285.953 kb on + strand, within Ac3H11_4677 at 285.953 kb on + strand, within Ac3H11_4677 at 285.953 kb on + strand at 285.953 kb on + strand, within Ac3H11_4677 at 285.954 kb on - strand, within Ac3H11_4677 at 285.954 kb on - strand, within Ac3H11_4677 at 285.954 kb on - strand, within Ac3H11_4677 at 285.954 kb on - strand, within Ac3H11_4677 at 285.960 kb on + strand, within Ac3H11_4677 at 286.053 kb on + strand at 286.053 kb on + strand at 286.053 kb on + strand at 286.106 kb on + strand at 286.106 kb on + strand at 286.106 kb on + strand at 286.107 kb on - strand at 286.107 kb on - strand at 286.107 kb on - strand at 286.107 kb on - strand at 286.167 kb on + strand at 286.338 kb on + strand, within Ac3H11_4678 at 286.338 kb on + strand, within Ac3H11_4678 at 286.338 kb on + strand, within Ac3H11_4678 at 286.338 kb on + strand, within Ac3H11_4678 at 286.339 kb on - strand, within Ac3H11_4678 at 286.339 kb on - strand, within Ac3H11_4678 at 286.467 kb on + strand, within Ac3H11_4678 at 286.468 kb on - strand, within Ac3H11_4678 at 286.468 kb on - strand, within Ac3H11_4678 at 286.477 kb on - strand, within Ac3H11_4678 at 286.746 kb on + strand, within Ac3H11_4678 at 286.747 kb on - strand, within Ac3H11_4678 at 286.747 kb on - strand, within Ac3H11_4678 at 286.886 kb on + strand at 286.886 kb on + strand at 286.887 kb on - strand at 286.887 kb on - strand at 286.887 kb on - strand at 286.917 kb on + strand at 286.917 kb on + strand at 286.918 kb on - strand at 287.004 kb on + strand at 287.004 kb on + strand at 287.004 kb on + strand at 287.004 kb on + strand at 287.004 kb on + strand at 287.004 kb on + strand at 287.005 kb on - strand at 287.005 kb on - strand at 287.016 kb on - strand at 287.033 kb on + strand at 287.033 kb on + strand at 287.034 kb on - strand at 287.039 kb on + strand at 287.039 kb on + strand at 287.039 kb on + strand at 287.039 kb on + strand at 287.039 kb on + strand at 287.039 kb on + strand at 287.039 kb on + strand at 287.039 kb on + strand at 287.040 kb on - strand at 287.040 kb on - strand at 287.040 kb on - strand at 287.040 kb on - strand at 287.065 kb on + strand at 287.066 kb on - strand at 287.066 kb on - strand at 287.076 kb on + strand at 287.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 284,642 + +0.7 284,642 + -0.9 284,642 + +3.0 284,937 + Ac3H11_4676 0.26 +0.7 285,642 + +1.0 285,642 + +3.1 285,642 + +1.7 285,642 + -1.0 285,642 + +0.4 285,643 - -0.7 285,643 - -2.0 285,947 + Ac3H11_4677 0.70 +0.1 285,947 + Ac3H11_4677 0.70 +2.0 285,948 - Ac3H11_4677 0.70 +1.7 285,948 - Ac3H11_4677 0.70 -0.6 285,953 + Ac3H11_4677 0.71 +1.5 285,953 + Ac3H11_4677 0.71 +2.3 285,953 + +2.9 285,953 + Ac3H11_4677 0.71 +1.5 285,954 - Ac3H11_4677 0.71 -4.2 285,954 - Ac3H11_4677 0.71 -0.6 285,954 - Ac3H11_4677 0.71 -2.4 285,954 - Ac3H11_4677 0.71 +2.4 285,960 + Ac3H11_4677 0.72 -1.5 286,053 + -2.2 286,053 + -3.6 286,053 + -0.6 286,106 + -3.2 286,106 + -2.1 286,106 + +1.1 286,107 - +2.4 286,107 - +2.0 286,107 - -1.0 286,107 - -1.0 286,167 + +0.5 286,338 + Ac3H11_4678 0.23 +2.1 286,338 + Ac3H11_4678 0.23 +0.7 286,338 + Ac3H11_4678 0.23 -0.6 286,338 + Ac3H11_4678 0.23 -0.7 286,339 - Ac3H11_4678 0.23 +0.7 286,339 - Ac3H11_4678 0.23 +0.2 286,467 + Ac3H11_4678 0.41 -0.4 286,468 - Ac3H11_4678 0.41 -0.3 286,468 - Ac3H11_4678 0.41 -1.7 286,477 - Ac3H11_4678 0.42 -0.2 286,746 + Ac3H11_4678 0.78 -0.1 286,747 - Ac3H11_4678 0.78 +0.1 286,747 - Ac3H11_4678 0.78 -1.5 286,886 + -1.7 286,886 + +0.3 286,887 - -2.3 286,887 - -0.6 286,887 - +2.0 286,917 + -0.0 286,917 + +2.5 286,918 - +2.3 287,004 + -2.0 287,004 + +1.0 287,004 + +0.6 287,004 + +0.5 287,004 + -2.6 287,004 + -2.2 287,005 - +0.6 287,005 - +1.4 287,016 - +0.5 287,033 + -0.6 287,033 + -2.6 287,034 - +3.1 287,039 + -1.9 287,039 + +1.5 287,039 + +1.9 287,039 + +2.6 287,039 + -0.4 287,039 + +0.7 287,039 + +2.5 287,039 + +0.0 287,040 - -2.2 287,040 - -2.2 287,040 - +0.0 287,040 - -0.4 287,065 + -1.7 287,066 - -0.5 287,066 - +1.1 287,076 + -2.6 287,077 - +0.4
Or see this region's nucleotide sequence