Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4622 and Ac3H11_4623 are separated by 36 nucleotides Ac3H11_4623 and Ac3H11_4624 are separated by 283 nucleotides
Ac3H11_4622 - Steroid delta-isomerase domain protein, at 225,619 to 225,942
_4622
Ac3H11_4623 - Tricarboxylate transport protein TctC, at 225,979 to 227,097
_4623
Ac3H11_4624 - Tricarboxylate transport protein TctC, at 227,381 to 228,367
_4624
Position (kb) 225
226
227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 225.026 kb on + strand at 225.027 kb on - strand at 225.071 kb on + strand at 225.085 kb on + strand at 225.184 kb on + strand at 225.184 kb on + strand at 225.184 kb on + strand at 225.184 kb on + strand at 225.184 kb on + strand at 225.185 kb on - strand at 225.185 kb on - strand at 225.244 kb on + strand at 225.244 kb on + strand at 225.244 kb on + strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.300 kb on + strand at 225.300 kb on + strand at 225.300 kb on + strand at 225.301 kb on - strand at 225.301 kb on - strand at 225.327 kb on - strand at 225.340 kb on - strand at 225.546 kb on + strand at 225.547 kb on - strand at 225.564 kb on + strand at 225.643 kb on + strand at 225.643 kb on + strand at 225.643 kb on + strand at 225.644 kb on - strand at 225.644 kb on - strand at 225.664 kb on + strand, within Ac3H11_4622 at 225.664 kb on + strand, within Ac3H11_4622 at 225.664 kb on + strand, within Ac3H11_4622 at 225.664 kb on + strand, within Ac3H11_4622 at 225.664 kb on + strand, within Ac3H11_4622 at 225.664 kb on + strand, within Ac3H11_4622 at 225.665 kb on - strand, within Ac3H11_4622 at 225.665 kb on - strand, within Ac3H11_4622 at 225.665 kb on - strand, within Ac3H11_4622 at 225.665 kb on - strand, within Ac3H11_4622 at 225.856 kb on + strand, within Ac3H11_4622 at 225.857 kb on - strand, within Ac3H11_4622 at 225.978 kb on - strand at 225.978 kb on - strand at 225.978 kb on - strand at 225.978 kb on - strand at 225.978 kb on - strand at 226.007 kb on - strand at 226.214 kb on + strand, within Ac3H11_4623 at 226.214 kb on + strand, within Ac3H11_4623 at 226.215 kb on - strand, within Ac3H11_4623 at 226.215 kb on - strand, within Ac3H11_4623 at 226.646 kb on + strand, within Ac3H11_4623 at 226.647 kb on - strand, within Ac3H11_4623 at 226.661 kb on + strand, within Ac3H11_4623 at 226.661 kb on + strand, within Ac3H11_4623 at 226.662 kb on - strand, within Ac3H11_4623 at 226.713 kb on - strand, within Ac3H11_4623 at 227.174 kb on + strand at 227.391 kb on + strand at 227.391 kb on + strand at 227.391 kb on + strand at 227.392 kb on - strand at 227.599 kb on - strand, within Ac3H11_4624 at 227.599 kb on - strand, within Ac3H11_4624 at 227.706 kb on + strand, within Ac3H11_4624 at 227.707 kb on - strand, within Ac3H11_4624 at 227.817 kb on + strand, within Ac3H11_4624 at 227.817 kb on + strand, within Ac3H11_4624 at 227.817 kb on + strand, within Ac3H11_4624 at 228.018 kb on + strand, within Ac3H11_4624 at 228.018 kb on + strand, within Ac3H11_4624 at 228.058 kb on - strand, within Ac3H11_4624
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 225,026 + -0.6 225,027 - +1.5 225,071 + -0.8 225,085 + +1.2 225,184 + -2.7 225,184 + +0.3 225,184 + -0.3 225,184 + +0.6 225,184 + +0.6 225,185 - -0.3 225,185 - -0.1 225,244 + -1.2 225,244 + -0.8 225,244 + +1.5 225,245 - +0.9 225,245 - +0.3 225,300 + +0.7 225,300 + +0.7 225,300 + -0.9 225,301 - -0.6 225,301 - -0.3 225,327 - +1.6 225,340 - -0.6 225,546 + -0.3 225,547 - -1.7 225,564 + +0.8 225,643 + +0.3 225,643 + +2.5 225,643 + -0.3 225,644 - -2.7 225,644 - -0.2 225,664 + Ac3H11_4622 0.14 -0.9 225,664 + Ac3H11_4622 0.14 -1.5 225,664 + Ac3H11_4622 0.14 -3.1 225,664 + Ac3H11_4622 0.14 -0.0 225,664 + Ac3H11_4622 0.14 +0.7 225,664 + Ac3H11_4622 0.14 +0.0 225,665 - Ac3H11_4622 0.14 -1.5 225,665 - Ac3H11_4622 0.14 +2.0 225,665 - Ac3H11_4622 0.14 +0.9 225,665 - Ac3H11_4622 0.14 +1.5 225,856 + Ac3H11_4622 0.73 -1.6 225,857 - Ac3H11_4622 0.73 +2.4 225,978 - +1.6 225,978 - -2.1 225,978 - +1.3 225,978 - -0.8 225,978 - +0.0 226,007 - -2.2 226,214 + Ac3H11_4623 0.21 -2.6 226,214 + Ac3H11_4623 0.21 +0.7 226,215 - Ac3H11_4623 0.21 -0.8 226,215 - Ac3H11_4623 0.21 -0.9 226,646 + Ac3H11_4623 0.60 +0.6 226,647 - Ac3H11_4623 0.60 -2.9 226,661 + Ac3H11_4623 0.61 +1.1 226,661 + Ac3H11_4623 0.61 +0.4 226,662 - Ac3H11_4623 0.61 +2.2 226,713 - Ac3H11_4623 0.66 -3.3 227,174 + -0.7 227,391 + -1.1 227,391 + +0.8 227,391 + -0.0 227,392 - +2.7 227,599 - Ac3H11_4624 0.22 +0.9 227,599 - Ac3H11_4624 0.22 -2.4 227,706 + Ac3H11_4624 0.33 -0.8 227,707 - Ac3H11_4624 0.33 -0.9 227,817 + Ac3H11_4624 0.44 +0.1 227,817 + Ac3H11_4624 0.44 +0.3 227,817 + Ac3H11_4624 0.44 +2.0 228,018 + Ac3H11_4624 0.65 +1.5 228,018 + Ac3H11_4624 0.65 +0.6 228,058 - Ac3H11_4624 0.69 +2.1
Or see this region's nucleotide sequence