Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4474

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4473 and Ac3H11_4474 are separated by 70 nucleotidesAc3H11_4474 and Ac3H11_4475 are separated by 182 nucleotides Ac3H11_4473 - Twitching motility protein PilT, at 56,006 to 57,049 _4473 Ac3H11_4474 - Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC, at 57,120 to 57,794 _4474 Ac3H11_4475 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 57,977 to 59,044 _4475 Position (kb) 57 58Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.596 kb on - strand, within Ac3H11_4473at 56.613 kb on + strand, within Ac3H11_4473at 56.613 kb on + strand, within Ac3H11_4473at 56.614 kb on - strand, within Ac3H11_4473at 56.614 kb on - strand, within Ac3H11_4473at 56.862 kb on + strand, within Ac3H11_4473at 56.862 kb on + strand, within Ac3H11_4473at 56.862 kb on + strand, within Ac3H11_4473at 56.863 kb on - strand, within Ac3H11_4473at 56.863 kb on - strand, within Ac3H11_4473at 56.863 kb on - strand, within Ac3H11_4473at 56.863 kb on - strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strandat 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.896 kb on - strand, within Ac3H11_4473at 56.896 kb on - strand, within Ac3H11_4473at 57.060 kb on + strandat 57.061 kb on - strandat 57.070 kb on + strandat 57.070 kb on + strandat 57.071 kb on - strandat 57.086 kb on + strandat 57.086 kb on + strandat 57.086 kb on + strandat 57.086 kb on + strandat 57.086 kb on + strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.101 kb on + strandat 57.101 kb on + strandat 57.120 kb on - strandat 57.258 kb on + strand, within Ac3H11_4474at 57.258 kb on + strand, within Ac3H11_4474at 57.258 kb on + strand, within Ac3H11_4474at 57.259 kb on - strand, within Ac3H11_4474at 57.259 kb on - strand, within Ac3H11_4474at 57.259 kb on - strand, within Ac3H11_4474at 57.259 kb on - strand, within Ac3H11_4474at 57.259 kb on - strand, within Ac3H11_4474at 57.259 kb on - strand, within Ac3H11_4474at 57.259 kb on - strand, within Ac3H11_4474at 57.457 kb on + strand, within Ac3H11_4474at 57.457 kb on + strand, within Ac3H11_4474at 57.457 kb on + strand, within Ac3H11_4474at 57.457 kb on + strand, within Ac3H11_4474at 57.458 kb on - strand, within Ac3H11_4474at 57.458 kb on - strand, within Ac3H11_4474at 57.458 kb on - strand, within Ac3H11_4474at 57.458 kb on - strand, within Ac3H11_4474at 57.458 kb on - strand, within Ac3H11_4474at 57.458 kb on - strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.461 kb on + strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.462 kb on - strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.463 kb on + strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.464 kb on - strand, within Ac3H11_4474at 57.467 kb on + strand, within Ac3H11_4474at 57.467 kb on + strand, within Ac3H11_4474at 57.467 kb on + strand, within Ac3H11_4474at 57.467 kb on + strand, within Ac3H11_4474at 57.467 kb on + strand, within Ac3H11_4474at 57.468 kb on - strand, within Ac3H11_4474at 57.468 kb on - strand, within Ac3H11_4474at 57.468 kb on - strand, within Ac3H11_4474at 57.468 kb on - strand, within Ac3H11_4474at 57.468 kb on - strand, within Ac3H11_4474at 57.468 kb on - strand, within Ac3H11_4474at 57.468 kb on - strand, within Ac3H11_4474at 57.479 kb on + strand, within Ac3H11_4474at 58.077 kb on + strandat 58.077 kb on + strandat 58.077 kb on + strandat 58.077 kb on + strandat 58.078 kb on - strandat 58.078 kb on - strandat 58.078 kb on - strandat 58.302 kb on + strand, within Ac3H11_4475at 58.302 kb on + strand, within Ac3H11_4475at 58.303 kb on - strand, within Ac3H11_4475at 58.303 kb on - strand, within Ac3H11_4475at 58.303 kb on - strand, within Ac3H11_4475at 58.303 kb on - strand, within Ac3H11_4475at 58.488 kb on + strand, within Ac3H11_4475at 58.488 kb on + strand, within Ac3H11_4475at 58.488 kb on + strand, within Ac3H11_4475at 58.488 kb on + strand, within Ac3H11_4475at 58.488 kb on + strand, within Ac3H11_4475at 58.488 kb on + strand, within Ac3H11_4475at 58.488 kb on + strand, within Ac3H11_4475at 58.489 kb on - strand, within Ac3H11_4475at 58.489 kb on - strand, within Ac3H11_4475at 58.489 kb on - strand, within Ac3H11_4475at 58.489 kb on - strand, within Ac3H11_4475at 58.489 kb on - strand, within Ac3H11_4475at 58.489 kb on - strand, within Ac3H11_4475at 58.489 kb on - strand, within Ac3H11_4475at 58.489 kb on - strand, within Ac3H11_4475at 58.489 kb on - strand, within Ac3H11_4475at 58.602 kb on + strand, within Ac3H11_4475at 58.602 kb on + strand, within Ac3H11_4475at 58.603 kb on - strand, within Ac3H11_4475at 58.791 kb on + strand, within Ac3H11_4475at 58.792 kb on - strand, within Ac3H11_4475at 58.792 kb on - strand, within Ac3H11_4475at 58.792 kb on - strand, within Ac3H11_4475

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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56,142 + Ac3H11_4473 0.13 -2.7
56,142 + Ac3H11_4473 0.13 -4.4
56,142 + Ac3H11_4473 0.13 -0.6
56,142 + Ac3H11_4473 0.13 -2.0
56,142 + Ac3H11_4473 0.13 -0.7
56,142 + Ac3H11_4473 0.13 +0.0
56,142 + Ac3H11_4473 0.13 -3.8
56,142 + Ac3H11_4473 0.13 -1.5
56,142 + Ac3H11_4473 0.13 -1.9
56,143 - Ac3H11_4473 0.13 -3.0
56,143 - Ac3H11_4473 0.13 +1.9
56,143 - Ac3H11_4473 0.13 -2.1
56,143 - Ac3H11_4473 0.13 -1.8
56,143 - Ac3H11_4473 0.13 -2.2
56,143 - Ac3H11_4473 0.13 -4.7
56,143 - Ac3H11_4473 0.13 -2.5
56,143 - Ac3H11_4473 0.13 -1.6
56,143 - Ac3H11_4473 0.13 +0.1
56,143 - Ac3H11_4473 0.13 -2.6
56,143 - Ac3H11_4473 0.13 -3.9
56,143 - Ac3H11_4473 0.13 -2.5
56,143 - Ac3H11_4473 0.13 -3.9
56,143 - Ac3H11_4473 0.13 -3.4
56,143 - Ac3H11_4473 0.13 -2.8
56,143 - Ac3H11_4473 0.13 -1.7
56,596 - Ac3H11_4473 0.57 -0.4
56,613 + Ac3H11_4473 0.58 -2.7
56,613 + Ac3H11_4473 0.58 -2.5
56,614 - Ac3H11_4473 0.58 -2.6
56,614 - Ac3H11_4473 0.58 -1.3
56,862 + Ac3H11_4473 0.82 -0.6
56,862 + Ac3H11_4473 0.82 -2.2
56,862 + Ac3H11_4473 0.82 -3.1
56,863 - Ac3H11_4473 0.82 -1.8
56,863 - Ac3H11_4473 0.82 -2.5
56,863 - Ac3H11_4473 0.82 -1.8
56,863 - Ac3H11_4473 0.82 -2.0
56,895 + Ac3H11_4473 0.85 -2.6
56,895 + Ac3H11_4473 0.85 -0.6
56,895 + +1.9
56,895 + Ac3H11_4473 0.85 -2.5
56,895 + Ac3H11_4473 0.85 +0.9
56,895 + Ac3H11_4473 0.85 -3.1
56,895 + Ac3H11_4473 0.85 -2.8
56,896 - Ac3H11_4473 0.85 -2.5
56,896 - Ac3H11_4473 0.85 -3.7
57,060 + -2.1
57,061 - +3.5
57,070 + -0.6
57,070 + -1.1
57,071 - -0.1
57,086 + -2.7
57,086 + +0.0
57,086 + -3.1
57,086 + -2.0
57,086 + -0.0
57,087 - -0.3
57,087 - +1.1
57,087 - +3.7
57,087 - -0.0
57,087 - -0.6
57,101 + +0.7
57,101 + -0.0
57,120 - -1.0
57,258 + Ac3H11_4474 0.20 -1.1
57,258 + Ac3H11_4474 0.20 +0.5
57,258 + Ac3H11_4474 0.20 -1.4
57,259 - Ac3H11_4474 0.21 +0.8
57,259 - Ac3H11_4474 0.21 -3.4
57,259 - Ac3H11_4474 0.21 -0.9
57,259 - Ac3H11_4474 0.21 +2.0
57,259 - Ac3H11_4474 0.21 +1.9
57,259 - Ac3H11_4474 0.21 -1.7
57,259 - Ac3H11_4474 0.21 +1.7
57,457 + Ac3H11_4474 0.50 +1.6
57,457 + Ac3H11_4474 0.50 -0.0
57,457 + Ac3H11_4474 0.50 +2.2
57,457 + Ac3H11_4474 0.50 -2.1
57,458 - Ac3H11_4474 0.50 +3.0
57,458 - Ac3H11_4474 0.50 +0.7
57,458 - Ac3H11_4474 0.50 +1.7
57,458 - Ac3H11_4474 0.50 -0.3
57,458 - Ac3H11_4474 0.50 +0.6
57,458 - Ac3H11_4474 0.50 -1.4
57,461 + Ac3H11_4474 0.51 -0.3
57,461 + Ac3H11_4474 0.51 +0.6
57,461 + Ac3H11_4474 0.51 +1.9
57,461 + Ac3H11_4474 0.51 +0.4
57,461 + Ac3H11_4474 0.51 +1.7
57,461 + Ac3H11_4474 0.51 -2.8
57,461 + Ac3H11_4474 0.51 +1.3
57,461 + Ac3H11_4474 0.51 +0.6
57,461 + Ac3H11_4474 0.51 +0.8
57,461 + Ac3H11_4474 0.51 -0.9
57,461 + Ac3H11_4474 0.51 +0.7
57,461 + Ac3H11_4474 0.51 +1.2
57,461 + Ac3H11_4474 0.51 +0.1
57,461 + Ac3H11_4474 0.51 +0.9
57,461 + Ac3H11_4474 0.51 -1.0
57,461 + Ac3H11_4474 0.51 +0.8
57,461 + Ac3H11_4474 0.51 -2.8
57,461 + Ac3H11_4474 0.51 +0.9
57,461 + Ac3H11_4474 0.51 -0.4
57,461 + Ac3H11_4474 0.51 -1.4
57,461 + Ac3H11_4474 0.51 -0.2
57,462 - Ac3H11_4474 0.51 +1.7
57,462 - Ac3H11_4474 0.51 -1.3
57,462 - Ac3H11_4474 0.51 +3.2
57,462 - Ac3H11_4474 0.51 +0.1
57,462 - Ac3H11_4474 0.51 -2.5
57,462 - Ac3H11_4474 0.51 -1.0
57,462 - Ac3H11_4474 0.51 +1.6
57,462 - Ac3H11_4474 0.51 +1.6
57,462 - Ac3H11_4474 0.51 -1.2
57,462 - Ac3H11_4474 0.51 -0.5
57,462 - Ac3H11_4474 0.51 +0.2
57,462 - Ac3H11_4474 0.51 +0.8
57,462 - Ac3H11_4474 0.51 +1.0
57,462 - Ac3H11_4474 0.51 +1.9
57,462 - Ac3H11_4474 0.51 +0.7
57,462 - Ac3H11_4474 0.51 -0.8
57,462 - Ac3H11_4474 0.51 -0.0
57,462 - Ac3H11_4474 0.51 -1.8
57,463 + Ac3H11_4474 0.51 +0.2
57,463 + Ac3H11_4474 0.51 +2.6
57,463 + Ac3H11_4474 0.51 -0.2
57,463 + Ac3H11_4474 0.51 +0.1
57,463 + Ac3H11_4474 0.51 +3.3
57,463 + Ac3H11_4474 0.51 -0.2
57,463 + Ac3H11_4474 0.51 -0.8
57,463 + Ac3H11_4474 0.51 -2.6
57,463 + Ac3H11_4474 0.51 +0.1
57,463 + Ac3H11_4474 0.51 -2.5
57,463 + Ac3H11_4474 0.51 +0.5
57,463 + Ac3H11_4474 0.51 +0.7
57,463 + Ac3H11_4474 0.51 -0.3
57,463 + Ac3H11_4474 0.51 -2.7
57,463 + Ac3H11_4474 0.51 +0.5
57,463 + Ac3H11_4474 0.51 +0.2
57,463 + Ac3H11_4474 0.51 -0.4
57,463 + Ac3H11_4474 0.51 -1.6
57,464 - Ac3H11_4474 0.51 -2.3
57,464 - Ac3H11_4474 0.51 +0.8
57,464 - Ac3H11_4474 0.51 -0.6
57,464 - Ac3H11_4474 0.51 -0.8
57,464 - Ac3H11_4474 0.51 -2.3
57,464 - Ac3H11_4474 0.51 -0.3
57,464 - Ac3H11_4474 0.51 +3.2
57,464 - Ac3H11_4474 0.51 +0.6
57,464 - Ac3H11_4474 0.51 -0.8
57,464 - Ac3H11_4474 0.51 -0.8
57,464 - Ac3H11_4474 0.51 +1.1
57,464 - Ac3H11_4474 0.51 +1.1
57,464 - Ac3H11_4474 0.51 +0.3
57,464 - Ac3H11_4474 0.51 +3.9
57,464 - Ac3H11_4474 0.51 +0.8
57,464 - Ac3H11_4474 0.51 +1.0
57,464 - Ac3H11_4474 0.51 -0.6
57,464 - Ac3H11_4474 0.51 -2.4
57,464 - Ac3H11_4474 0.51 -0.9
57,464 - Ac3H11_4474 0.51 -3.1
57,464 - Ac3H11_4474 0.51 +0.8
57,464 - Ac3H11_4474 0.51 +2.0
57,464 - Ac3H11_4474 0.51 +0.1
57,464 - Ac3H11_4474 0.51 +1.2
57,464 - Ac3H11_4474 0.51 -0.5
57,464 - Ac3H11_4474 0.51 +1.3
57,467 + Ac3H11_4474 0.51 -0.9
57,467 + Ac3H11_4474 0.51 +0.4
57,467 + Ac3H11_4474 0.51 +0.3
57,467 + Ac3H11_4474 0.51 -0.5
57,467 + Ac3H11_4474 0.51 +0.2
57,468 - Ac3H11_4474 0.52 +1.6
57,468 - Ac3H11_4474 0.52 -2.5
57,468 - Ac3H11_4474 0.52 -0.1
57,468 - Ac3H11_4474 0.52 +1.1
57,468 - Ac3H11_4474 0.52 +0.2
57,468 - Ac3H11_4474 0.52 +0.3
57,468 - Ac3H11_4474 0.52 -1.3
57,479 + Ac3H11_4474 0.53 -0.8
58,077 + -0.4
58,077 + -1.7
58,077 + +1.3
58,077 + -1.7
58,078 - +0.8
58,078 - +0.5
58,078 - +0.6
58,302 + Ac3H11_4475 0.30 +0.4
58,302 + Ac3H11_4475 0.30 +0.6
58,303 - Ac3H11_4475 0.31 +1.6
58,303 - Ac3H11_4475 0.31 -1.3
58,303 - Ac3H11_4475 0.31 -0.8
58,303 - Ac3H11_4475 0.31 +2.2
58,488 + Ac3H11_4475 0.48 -0.6
58,488 + Ac3H11_4475 0.48 +1.0
58,488 + Ac3H11_4475 0.48 -2.9
58,488 + Ac3H11_4475 0.48 +0.6
58,488 + Ac3H11_4475 0.48 -0.7
58,488 + Ac3H11_4475 0.48 +1.8
58,488 + Ac3H11_4475 0.48 -0.8
58,489 - Ac3H11_4475 0.48 +1.6
58,489 - Ac3H11_4475 0.48 +2.2
58,489 - Ac3H11_4475 0.48 +1.2
58,489 - Ac3H11_4475 0.48 +2.6
58,489 - Ac3H11_4475 0.48 -1.1
58,489 - Ac3H11_4475 0.48 +2.3
58,489 - Ac3H11_4475 0.48 +0.6
58,489 - Ac3H11_4475 0.48 -2.5
58,489 - Ac3H11_4475 0.48 +1.4
58,602 + Ac3H11_4475 0.59 -0.7
58,602 + Ac3H11_4475 0.59 +1.2
58,603 - Ac3H11_4475 0.59 -0.6
58,791 + Ac3H11_4475 0.76 +2.7
58,792 - Ac3H11_4475 0.76 +1.1
58,792 - Ac3H11_4475 0.76 +1.7
58,792 - Ac3H11_4475 0.76 -0.2

Or see this region's nucleotide sequence