Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4377

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4376 and Ac3H11_4377 are separated by 3 nucleotidesAc3H11_4377 and Ac3H11_4378 are separated by 88 nucleotides Ac3H11_4376 - Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12), at 164,249 to 166,444 _4376 Ac3H11_4377 - Cyclic di-GMP binding protein precursor, at 166,448 to 168,823 _4377 Ac3H11_4378 - Cellulose synthase operon protein C, at 168,912 to 173,249 _4378 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 165.492 kb on - strand, within Ac3H11_4376at 165.518 kb on + strand, within Ac3H11_4376at 165.518 kb on + strand, within Ac3H11_4376at 165.560 kb on + strand, within Ac3H11_4376at 165.615 kb on - strand, within Ac3H11_4376at 165.698 kb on + strand, within Ac3H11_4376at 165.698 kb on + strand, within Ac3H11_4376at 165.698 kb on + strand, within Ac3H11_4376at 165.698 kb on + strand, within Ac3H11_4376at 165.699 kb on - strand, within Ac3H11_4376at 165.719 kb on + strand, within Ac3H11_4376at 165.719 kb on + strand, within Ac3H11_4376at 165.719 kb on + strand, within Ac3H11_4376at 165.719 kb on + strand, within Ac3H11_4376at 165.720 kb on - strand, within Ac3H11_4376at 165.720 kb on - strand, within Ac3H11_4376at 165.720 kb on - strand, within Ac3H11_4376at 165.720 kb on - strand, within Ac3H11_4376at 165.720 kb on - strand, within Ac3H11_4376at 165.720 kb on - strand, within Ac3H11_4376at 165.809 kb on + strand, within Ac3H11_4376at 165.809 kb on + strand, within Ac3H11_4376at 165.810 kb on - strand, within Ac3H11_4376at 165.836 kb on + strand, within Ac3H11_4376at 165.836 kb on + strand, within Ac3H11_4376at 165.836 kb on + strand, within Ac3H11_4376at 165.836 kb on + strand, within Ac3H11_4376at 165.837 kb on - strand, within Ac3H11_4376at 165.837 kb on - strand, within Ac3H11_4376at 165.837 kb on - strand, within Ac3H11_4376at 165.950 kb on + strand, within Ac3H11_4376at 165.951 kb on - strand, within Ac3H11_4376at 165.951 kb on - strand, within Ac3H11_4376at 165.951 kb on - strand, within Ac3H11_4376at 166.806 kb on - strand, within Ac3H11_4377at 166.806 kb on - strand, within Ac3H11_4377at 166.811 kb on + strand, within Ac3H11_4377at 166.812 kb on - strand, within Ac3H11_4377at 166.988 kb on + strand, within Ac3H11_4377at 166.988 kb on + strand, within Ac3H11_4377at 166.989 kb on - strand, within Ac3H11_4377at 166.989 kb on - strand, within Ac3H11_4377at 166.989 kb on - strand, within Ac3H11_4377at 167.531 kb on + strand, within Ac3H11_4377at 167.531 kb on + strand, within Ac3H11_4377at 167.531 kb on + strand, within Ac3H11_4377at 167.531 kb on + strand, within Ac3H11_4377at 167.532 kb on - strand, within Ac3H11_4377at 167.532 kb on - strand, within Ac3H11_4377at 167.616 kb on - strand, within Ac3H11_4377at 167.684 kb on - strand, within Ac3H11_4377at 167.684 kb on - strand, within Ac3H11_4377at 167.709 kb on - strand, within Ac3H11_4377at 167.927 kb on + strand, within Ac3H11_4377at 167.927 kb on + strand, within Ac3H11_4377at 167.927 kb on + strandat 167.927 kb on + strand, within Ac3H11_4377at 167.927 kb on + strand, within Ac3H11_4377at 167.928 kb on - strand, within Ac3H11_4377at 167.928 kb on - strand, within Ac3H11_4377at 167.928 kb on - strand, within Ac3H11_4377at 167.928 kb on - strand, within Ac3H11_4377at 167.930 kb on + strand, within Ac3H11_4377at 167.930 kb on + strand, within Ac3H11_4377at 167.930 kb on + strand, within Ac3H11_4377at 167.930 kb on + strand, within Ac3H11_4377at 167.931 kb on - strand, within Ac3H11_4377at 167.931 kb on - strand, within Ac3H11_4377at 167.931 kb on - strand, within Ac3H11_4377at 167.931 kb on - strand, within Ac3H11_4377at 167.931 kb on - strand, within Ac3H11_4377at 167.931 kb on - strand, within Ac3H11_4377at 167.931 kb on - strand, within Ac3H11_4377at 167.933 kb on + strand, within Ac3H11_4377at 167.933 kb on + strand, within Ac3H11_4377at 167.933 kb on + strand, within Ac3H11_4377at 167.933 kb on + strand, within Ac3H11_4377at 167.933 kb on + strand, within Ac3H11_4377at 167.934 kb on - strand, within Ac3H11_4377at 167.934 kb on - strand, within Ac3H11_4377at 167.934 kb on - strand, within Ac3H11_4377at 168.159 kb on - strand, within Ac3H11_4377at 168.159 kb on - strand, within Ac3H11_4377at 168.654 kb on - strandat 168.654 kb on - strandat 168.684 kb on - strandat 168.696 kb on - strandat 168.696 kb on - strandat 168.696 kb on - strandat 168.696 kb on - strandat 168.767 kb on + strandat 168.767 kb on + strandat 168.767 kb on + strandat 168.767 kb on + strandat 168.767 kb on + strandat 168.767 kb on + strandat 168.767 kb on + strandat 168.768 kb on - strandat 168.768 kb on - strandat 168.768 kb on - strandat 168.768 kb on - strandat 168.768 kb on - strandat 168.768 kb on - strandat 168.907 kb on + strandat 168.907 kb on + strandat 168.907 kb on + strandat 168.907 kb on + strandat 168.907 kb on + strandat 168.907 kb on + strandat 168.907 kb on + strandat 168.907 kb on + strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 169.035 kb on + strandat 169.035 kb on + strandat 169.035 kb on + strandat 169.036 kb on - strandat 169.123 kb on - strandat 169.123 kb on - strandat 169.123 kb on - strandat 169.176 kb on + strandat 169.323 kb on + strandat 169.323 kb on + strandat 169.324 kb on - strandat 169.374 kb on + strand, within Ac3H11_4378at 169.374 kb on + strand, within Ac3H11_4378at 169.374 kb on + strand, within Ac3H11_4378at 169.374 kb on + strand, within Ac3H11_4378at 169.375 kb on - strand, within Ac3H11_4378at 169.375 kb on - strand, within Ac3H11_4378at 169.377 kb on + strand, within Ac3H11_4378at 169.377 kb on + strand, within Ac3H11_4378at 169.377 kb on + strand, within Ac3H11_4378at 169.378 kb on - strand, within Ac3H11_4378at 169.378 kb on - strand, within Ac3H11_4378at 169.497 kb on + strand, within Ac3H11_4378at 169.636 kb on - strand, within Ac3H11_4378at 169.636 kb on - strand, within Ac3H11_4378at 169.636 kb on - strand, within Ac3H11_4378

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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165,492 - Ac3H11_4376 0.57 -2.5
165,518 + Ac3H11_4376 0.58 +0.5
165,518 + Ac3H11_4376 0.58 -1.5
165,560 + Ac3H11_4376 0.60 -1.3
165,615 - Ac3H11_4376 0.62 +0.9
165,698 + Ac3H11_4376 0.66 +1.7
165,698 + Ac3H11_4376 0.66 +2.9
165,698 + Ac3H11_4376 0.66 +0.8
165,698 + Ac3H11_4376 0.66 +1.6
165,699 - Ac3H11_4376 0.66 -3.8
165,719 + Ac3H11_4376 0.67 +0.2
165,719 + Ac3H11_4376 0.67 +3.2
165,719 + Ac3H11_4376 0.67 -1.0
165,719 + Ac3H11_4376 0.67 +2.6
165,720 - Ac3H11_4376 0.67 +1.5
165,720 - Ac3H11_4376 0.67 +0.0
165,720 - Ac3H11_4376 0.67 +0.9
165,720 - Ac3H11_4376 0.67 +1.2
165,720 - Ac3H11_4376 0.67 +0.2
165,720 - Ac3H11_4376 0.67 +0.7
165,809 + Ac3H11_4376 0.71 +2.5
165,809 + Ac3H11_4376 0.71 +1.4
165,810 - Ac3H11_4376 0.71 +0.9
165,836 + Ac3H11_4376 0.72 +2.7
165,836 + Ac3H11_4376 0.72 -1.7
165,836 + Ac3H11_4376 0.72 +1.7
165,836 + Ac3H11_4376 0.72 +2.3
165,837 - Ac3H11_4376 0.72 +2.0
165,837 - Ac3H11_4376 0.72 -2.7
165,837 - Ac3H11_4376 0.72 +2.9
165,950 + Ac3H11_4376 0.77 -0.9
165,951 - Ac3H11_4376 0.78 +0.3
165,951 - Ac3H11_4376 0.78 -0.9
165,951 - Ac3H11_4376 0.78 -2.4
166,806 - Ac3H11_4377 0.15 -4.1
166,806 - Ac3H11_4377 0.15 +1.3
166,811 + Ac3H11_4377 0.15 +3.5
166,812 - Ac3H11_4377 0.15 +0.7
166,988 + Ac3H11_4377 0.23 -1.5
166,988 + Ac3H11_4377 0.23 +1.1
166,989 - Ac3H11_4377 0.23 -0.2
166,989 - Ac3H11_4377 0.23 +1.0
166,989 - Ac3H11_4377 0.23 +0.4
167,531 + Ac3H11_4377 0.46 +1.6
167,531 + Ac3H11_4377 0.46 +0.0
167,531 + Ac3H11_4377 0.46 +2.5
167,531 + Ac3H11_4377 0.46 +2.0
167,532 - Ac3H11_4377 0.46 +1.9
167,532 - Ac3H11_4377 0.46 +2.7
167,616 - Ac3H11_4377 0.49 +1.1
167,684 - Ac3H11_4377 0.52 +1.6
167,684 - Ac3H11_4377 0.52 +1.5
167,709 - Ac3H11_4377 0.53 -1.7
167,927 + Ac3H11_4377 0.62 +3.4
167,927 + Ac3H11_4377 0.62 +2.1
167,927 + +3.0
167,927 + Ac3H11_4377 0.62 +2.7
167,927 + Ac3H11_4377 0.62 +2.4
167,928 - Ac3H11_4377 0.62 +1.3
167,928 - Ac3H11_4377 0.62 -3.7
167,928 - Ac3H11_4377 0.62 +3.1
167,928 - Ac3H11_4377 0.62 +2.4
167,930 + Ac3H11_4377 0.62 +1.3
167,930 + Ac3H11_4377 0.62 +1.4
167,930 + Ac3H11_4377 0.62 +0.8
167,930 + Ac3H11_4377 0.62 -0.2
167,931 - Ac3H11_4377 0.62 -1.5
167,931 - Ac3H11_4377 0.62 +2.7
167,931 - Ac3H11_4377 0.62 +2.5
167,931 - Ac3H11_4377 0.62 +2.0
167,931 - Ac3H11_4377 0.62 +0.7
167,931 - Ac3H11_4377 0.62 +2.4
167,931 - Ac3H11_4377 0.62 +1.2
167,933 + Ac3H11_4377 0.62 -2.6
167,933 + Ac3H11_4377 0.62 +1.6
167,933 + Ac3H11_4377 0.62 +1.8
167,933 + Ac3H11_4377 0.62 -0.6
167,933 + Ac3H11_4377 0.62 +0.0
167,934 - Ac3H11_4377 0.63 -0.1
167,934 - Ac3H11_4377 0.63 +1.8
167,934 - Ac3H11_4377 0.63 +1.5
168,159 - Ac3H11_4377 0.72 +1.5
168,159 - Ac3H11_4377 0.72 -0.9
168,654 - +2.0
168,654 - +3.1
168,684 - +0.9
168,696 - +2.3
168,696 - -2.7
168,696 - +0.2
168,696 - -0.3
168,767 + +1.0
168,767 + +1.2
168,767 + +1.1
168,767 + +0.3
168,767 + -2.3
168,767 + +0.9
168,767 + +0.6
168,768 - +1.2
168,768 - +0.6
168,768 - +2.5
168,768 - +1.3
168,768 - +2.0
168,768 - +0.7
168,907 + +1.3
168,907 + +1.1
168,907 + -0.7
168,907 + -1.3
168,907 + +0.3
168,907 + +0.4
168,907 + -2.8
168,907 + +0.3
168,908 - +1.6
168,908 - +1.2
168,908 - +1.3
168,908 - +2.0
168,908 - +1.1
168,908 - +0.8
168,908 - +1.9
168,908 - +0.6
169,035 + +0.8
169,035 + -1.1
169,035 + +1.6
169,036 - +0.6
169,123 - +5.7
169,123 - -0.7
169,123 - -1.5
169,176 + +2.2
169,323 + -1.6
169,323 + +0.4
169,324 - +0.3
169,374 + Ac3H11_4378 0.11 -0.1
169,374 + Ac3H11_4378 0.11 +1.1
169,374 + Ac3H11_4378 0.11 +1.1
169,374 + Ac3H11_4378 0.11 +1.1
169,375 - Ac3H11_4378 0.11 +1.1
169,375 - Ac3H11_4378 0.11 +2.6
169,377 + Ac3H11_4378 0.11 +0.6
169,377 + Ac3H11_4378 0.11 +0.1
169,377 + Ac3H11_4378 0.11 +1.9
169,378 - Ac3H11_4378 0.11 -0.3
169,378 - Ac3H11_4378 0.11 +0.8
169,497 + Ac3H11_4378 0.13 +0.6
169,636 - Ac3H11_4378 0.17 +2.9
169,636 - Ac3H11_4378 0.17 +1.5
169,636 - Ac3H11_4378 0.17 +1.8

Or see this region's nucleotide sequence