Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_388 and Ac3H11_389 are separated by 24 nucleotides Ac3H11_389 and Ac3H11_390 are separated by 230 nucleotides Ac3H11_390 and Ac3H11_391 are separated by 10 nucleotides
Ac3H11_388 - Thymidine phosphorylase (EC 2.4.2.4), at 68,970 to 71,456
_388
Ac3H11_389 - TRAP transporter solute receptor, TAXI family, at 71,481 to 72,848
_389
Ac3H11_390 - hypothetical protein, at 73,079 to 73,594
_390
Ac3H11_391 - secreted hydrolase, at 73,605 to 74,402
_391
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 70.752 kb on + strand, within Ac3H11_388 at 70.753 kb on - strand, within Ac3H11_388 at 70.882 kb on - strand, within Ac3H11_388 at 71.080 kb on - strand, within Ac3H11_388 at 71.080 kb on - strand, within Ac3H11_388 at 71.080 kb on - strand, within Ac3H11_388 at 71.222 kb on + strand at 71.223 kb on - strand at 71.578 kb on + strand at 71.578 kb on + strand at 71.578 kb on + strand at 71.579 kb on - strand at 71.579 kb on - strand at 71.593 kb on + strand at 71.593 kb on + strand at 71.593 kb on + strand at 71.593 kb on + strand at 71.594 kb on - strand at 71.714 kb on - strand, within Ac3H11_389 at 71.749 kb on + strand, within Ac3H11_389 at 71.749 kb on + strand, within Ac3H11_389 at 71.750 kb on - strand, within Ac3H11_389 at 71.750 kb on - strand, within Ac3H11_389 at 71.918 kb on + strand, within Ac3H11_389 at 71.919 kb on - strand, within Ac3H11_389 at 72.148 kb on + strand, within Ac3H11_389 at 72.148 kb on + strand, within Ac3H11_389 at 72.148 kb on + strand, within Ac3H11_389 at 72.148 kb on + strand, within Ac3H11_389 at 72.149 kb on - strand, within Ac3H11_389 at 72.149 kb on - strand, within Ac3H11_389 at 72.149 kb on - strand, within Ac3H11_389 at 72.149 kb on - strand, within Ac3H11_389 at 72.149 kb on - strand, within Ac3H11_389 at 72.149 kb on - strand, within Ac3H11_389 at 72.149 kb on - strand, within Ac3H11_389 at 72.436 kb on + strand, within Ac3H11_389 at 72.436 kb on + strand, within Ac3H11_389 at 72.436 kb on + strand, within Ac3H11_389 at 72.436 kb on + strand, within Ac3H11_389 at 72.436 kb on + strand, within Ac3H11_389 at 72.436 kb on + strand, within Ac3H11_389 at 72.436 kb on + strand, within Ac3H11_389 at 72.437 kb on - strand, within Ac3H11_389 at 72.437 kb on - strand, within Ac3H11_389 at 72.437 kb on - strand, within Ac3H11_389 at 72.437 kb on - strand, within Ac3H11_389 at 72.437 kb on - strand, within Ac3H11_389 at 72.464 kb on - strand, within Ac3H11_389 at 72.464 kb on - strand, within Ac3H11_389 at 72.552 kb on + strand, within Ac3H11_389 at 72.552 kb on + strand, within Ac3H11_389 at 72.552 kb on + strand, within Ac3H11_389 at 72.552 kb on + strand, within Ac3H11_389 at 72.553 kb on - strand, within Ac3H11_389 at 72.553 kb on - strand, within Ac3H11_389 at 72.553 kb on - strand, within Ac3H11_389 at 72.661 kb on + strand, within Ac3H11_389 at 72.723 kb on - strand at 72.748 kb on + strand at 72.749 kb on - strand at 72.749 kb on - strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.897 kb on + strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.898 kb on - strand at 72.958 kb on + strand at 72.959 kb on - strand at 73.080 kb on + strand at 73.080 kb on + strand at 73.081 kb on - strand at 73.081 kb on - strand at 73.170 kb on + strand, within Ac3H11_390 at 73.170 kb on + strand, within Ac3H11_390 at 73.170 kb on + strand, within Ac3H11_390 at 73.171 kb on - strand, within Ac3H11_390 at 73.299 kb on + strand, within Ac3H11_390 at 73.299 kb on + strand, within Ac3H11_390 at 73.299 kb on + strand, within Ac3H11_390 at 73.299 kb on + strand, within Ac3H11_390 at 73.299 kb on + strand, within Ac3H11_390 at 73.300 kb on - strand, within Ac3H11_390 at 73.300 kb on - strand, within Ac3H11_390 at 73.300 kb on - strand, within Ac3H11_390 at 73.300 kb on - strand, within Ac3H11_390 at 73.300 kb on - strand, within Ac3H11_390 at 73.300 kb on - strand, within Ac3H11_390 at 73.300 kb on - strand, within Ac3H11_390 at 73.300 kb on - strand, within Ac3H11_390 at 73.300 kb on - strand, within Ac3H11_390 at 73.580 kb on - strand at 73.580 kb on - strand at 73.580 kb on - strand at 73.606 kb on + strand at 73.607 kb on - strand at 73.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 70,752 + Ac3H11_388 0.72 +1.6 70,753 - Ac3H11_388 0.72 +1.5 70,882 - Ac3H11_388 0.77 -0.1 71,080 - Ac3H11_388 0.85 +0.4 71,080 - Ac3H11_388 0.85 -1.2 71,080 - Ac3H11_388 0.85 -2.4 71,222 + +1.7 71,223 - +1.6 71,578 + +0.9 71,578 + +1.8 71,578 + -0.4 71,579 - -0.8 71,579 - +0.8 71,593 + +0.3 71,593 + +0.8 71,593 + +1.1 71,593 + +0.6 71,594 - -0.4 71,714 - Ac3H11_389 0.17 +2.2 71,749 + Ac3H11_389 0.20 -1.3 71,749 + Ac3H11_389 0.20 -0.3 71,750 - Ac3H11_389 0.20 +1.7 71,750 - Ac3H11_389 0.20 -1.7 71,918 + Ac3H11_389 0.32 -1.4 71,919 - Ac3H11_389 0.32 -1.3 72,148 + Ac3H11_389 0.49 +1.6 72,148 + Ac3H11_389 0.49 -2.4 72,148 + Ac3H11_389 0.49 +2.5 72,148 + Ac3H11_389 0.49 +0.1 72,149 - Ac3H11_389 0.49 -2.0 72,149 - Ac3H11_389 0.49 -0.2 72,149 - Ac3H11_389 0.49 -1.7 72,149 - Ac3H11_389 0.49 +0.9 72,149 - Ac3H11_389 0.49 -2.0 72,149 - Ac3H11_389 0.49 +1.1 72,149 - Ac3H11_389 0.49 -0.6 72,436 + Ac3H11_389 0.70 +0.7 72,436 + Ac3H11_389 0.70 +1.7 72,436 + Ac3H11_389 0.70 -0.8 72,436 + Ac3H11_389 0.70 +3.2 72,436 + Ac3H11_389 0.70 +0.5 72,436 + Ac3H11_389 0.70 -1.3 72,436 + Ac3H11_389 0.70 +0.9 72,437 - Ac3H11_389 0.70 -0.3 72,437 - Ac3H11_389 0.70 +2.8 72,437 - Ac3H11_389 0.70 -1.4 72,437 - Ac3H11_389 0.70 +2.4 72,437 - Ac3H11_389 0.70 -2.4 72,464 - Ac3H11_389 0.72 +0.2 72,464 - Ac3H11_389 0.72 -0.1 72,552 + Ac3H11_389 0.78 -1.6 72,552 + Ac3H11_389 0.78 -1.8 72,552 + Ac3H11_389 0.78 +1.5 72,552 + Ac3H11_389 0.78 +3.9 72,553 - Ac3H11_389 0.78 +1.7 72,553 - Ac3H11_389 0.78 -2.9 72,553 - Ac3H11_389 0.78 -0.4 72,661 + Ac3H11_389 0.86 +0.4 72,723 - +1.0 72,748 + +2.1 72,749 - -0.1 72,749 - +2.4 72,897 + +0.6 72,897 + +0.1 72,897 + -1.8 72,897 + -2.4 72,897 + +2.0 72,897 + -0.9 72,897 + +1.0 72,897 + -1.9 72,897 + -0.2 72,897 + -1.5 72,897 + -1.6 72,897 + -0.6 72,897 + +3.3 72,897 + -1.2 72,898 - -1.6 72,898 - -1.9 72,898 - -1.2 72,898 - -1.0 72,898 - -0.9 72,898 - -0.9 72,898 - -0.5 72,898 - +2.4 72,898 - -0.6 72,898 - +0.5 72,898 - -0.3 72,898 - +1.0 72,898 - -2.3 72,898 - +0.2 72,898 - +1.2 72,898 - +2.7 72,898 - +3.5 72,898 - -0.2 72,898 - -0.2 72,958 + -1.2 72,959 - -2.3 73,080 + -0.4 73,080 + -1.2 73,081 - +0.1 73,081 - -0.7 73,170 + Ac3H11_390 0.18 +0.3 73,170 + Ac3H11_390 0.18 +2.1 73,170 + Ac3H11_390 0.18 -1.1 73,171 - Ac3H11_390 0.18 -2.3 73,299 + Ac3H11_390 0.43 -1.9 73,299 + Ac3H11_390 0.43 -0.1 73,299 + Ac3H11_390 0.43 -0.4 73,299 + Ac3H11_390 0.43 +2.6 73,299 + Ac3H11_390 0.43 +0.7 73,300 - Ac3H11_390 0.43 -0.4 73,300 - Ac3H11_390 0.43 -0.2 73,300 - Ac3H11_390 0.43 -1.9 73,300 - Ac3H11_390 0.43 -1.1 73,300 - Ac3H11_390 0.43 -0.3 73,300 - Ac3H11_390 0.43 +3.3 73,300 - Ac3H11_390 0.43 -0.2 73,300 - Ac3H11_390 0.43 -1.7 73,300 - Ac3H11_390 0.43 +1.9 73,580 - -0.2 73,580 - +0.3 73,580 - +2.7 73,606 + +1.6 73,607 - -1.2 73,607 - +1.9
Or see this region's nucleotide sequence