Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3837

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3836 and Ac3H11_3837 are separated by 41 nucleotidesAc3H11_3837 and Ac3H11_3838 overlap by 4 nucleotides Ac3H11_3836 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) / Aminodeoxychorismate lyase (EC 4.1.3.38), at 51,726 to 53,558 _3836 Ac3H11_3837 - Quinolinate synthetase (EC 2.5.1.72), at 53,600 to 54,730 _3837 Ac3H11_3838 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 54,727 to 55,575 _3838 Position (kb) 53 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 52.866 kb on + strand, within Ac3H11_3836at 52.866 kb on + strand, within Ac3H11_3836at 52.867 kb on - strand, within Ac3H11_3836at 52.867 kb on - strand, within Ac3H11_3836at 53.122 kb on + strand, within Ac3H11_3836at 53.123 kb on - strand, within Ac3H11_3836at 53.270 kb on - strand, within Ac3H11_3836at 53.270 kb on - strand, within Ac3H11_3836at 53.270 kb on - strand, within Ac3H11_3836at 53.563 kb on - strandat 53.728 kb on + strand, within Ac3H11_3837at 53.728 kb on + strand, within Ac3H11_3837at 53.841 kb on + strand, within Ac3H11_3837at 53.841 kb on + strand, within Ac3H11_3837at 53.842 kb on - strand, within Ac3H11_3837at 53.842 kb on - strand, within Ac3H11_3837at 54.129 kb on + strand, within Ac3H11_3837at 54.130 kb on - strand, within Ac3H11_3837at 54.130 kb on - strand, within Ac3H11_3837at 54.242 kb on + strand, within Ac3H11_3837at 54.242 kb on + strand, within Ac3H11_3837at 54.243 kb on - strand, within Ac3H11_3837at 54.264 kb on + strand, within Ac3H11_3837at 54.265 kb on - strand, within Ac3H11_3837at 54.265 kb on - strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.535 kb on - strand, within Ac3H11_3837at 54.535 kb on - strand, within Ac3H11_3837at 54.535 kb on - strand, within Ac3H11_3837at 54.535 kb on - strand, within Ac3H11_3837at 54.537 kb on + strand, within Ac3H11_3837at 54.537 kb on + strand, within Ac3H11_3837at 54.538 kb on - strand, within Ac3H11_3837at 54.583 kb on + strand, within Ac3H11_3837at 54.584 kb on - strand, within Ac3H11_3837at 54.717 kb on - strandat 55.139 kb on + strand, within Ac3H11_3838at 55.140 kb on - strand, within Ac3H11_3838at 55.140 kb on - strand, within Ac3H11_3838at 55.140 kb on - strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.220 kb on + strand, within Ac3H11_3838at 55.221 kb on - strand, within Ac3H11_3838at 55.221 kb on - strand, within Ac3H11_3838at 55.221 kb on - strand, within Ac3H11_3838at 55.221 kb on - strand, within Ac3H11_3838at 55.221 kb on - strand, within Ac3H11_3838at 55.221 kb on - strand, within Ac3H11_3838at 55.221 kb on - strand, within Ac3H11_3838at 55.558 kb on + strandat 55.594 kb on + strandat 55.595 kb on - strandat 55.595 kb on - strandat 55.595 kb on - strandat 55.682 kb on + strandat 55.682 kb on + strandat 55.682 kb on + strandat 55.683 kb on - strandat 55.683 kb on - strandat 55.686 kb on + strandat 55.686 kb on + strandat 55.686 kb on + strandat 55.687 kb on - strandat 55.687 kb on - strandat 55.687 kb on - strandat 55.695 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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52,866 + Ac3H11_3836 0.62 -1.4
52,866 + Ac3H11_3836 0.62 +0.0
52,867 - Ac3H11_3836 0.62 +0.8
52,867 - Ac3H11_3836 0.62 -0.4
53,122 + Ac3H11_3836 0.76 -1.4
53,123 - Ac3H11_3836 0.76 -0.5
53,270 - Ac3H11_3836 0.84 -0.5
53,270 - Ac3H11_3836 0.84 -1.2
53,270 - Ac3H11_3836 0.84 -1.4
53,563 - +1.7
53,728 + Ac3H11_3837 0.11 -2.0
53,728 + Ac3H11_3837 0.11 -2.7
53,841 + Ac3H11_3837 0.21 +0.1
53,841 + Ac3H11_3837 0.21 -1.6
53,842 - Ac3H11_3837 0.21 -1.6
53,842 - Ac3H11_3837 0.21 -1.2
54,129 + Ac3H11_3837 0.47 -3.2
54,130 - Ac3H11_3837 0.47 -0.8
54,130 - Ac3H11_3837 0.47 -1.1
54,242 + Ac3H11_3837 0.57 -0.4
54,242 + Ac3H11_3837 0.57 -0.4
54,243 - Ac3H11_3837 0.57 -0.5
54,264 + Ac3H11_3837 0.59 -1.7
54,265 - Ac3H11_3837 0.59 -2.5
54,265 - Ac3H11_3837 0.59 +0.0
54,534 + Ac3H11_3837 0.83 -1.9
54,534 + Ac3H11_3837 0.83 -0.1
54,534 + Ac3H11_3837 0.83 +0.7
54,534 + Ac3H11_3837 0.83 -1.1
54,534 + Ac3H11_3837 0.83 -1.1
54,534 + Ac3H11_3837 0.83 -2.0
54,534 + Ac3H11_3837 0.83 -2.6
54,535 - Ac3H11_3837 0.83 -2.8
54,535 - Ac3H11_3837 0.83 -0.2
54,535 - Ac3H11_3837 0.83 -2.1
54,535 - Ac3H11_3837 0.83 -2.3
54,537 + Ac3H11_3837 0.83 -1.8
54,537 + Ac3H11_3837 0.83 -3.9
54,538 - Ac3H11_3837 0.83 -3.0
54,583 + Ac3H11_3837 0.87 -0.4
54,584 - Ac3H11_3837 0.87 -0.1
54,717 - +0.3
55,139 + Ac3H11_3838 0.49 -2.6
55,140 - Ac3H11_3838 0.49 -0.4
55,140 - Ac3H11_3838 0.49 -2.1
55,140 - Ac3H11_3838 0.49 -1.3
55,220 + Ac3H11_3838 0.58 -0.3
55,220 + Ac3H11_3838 0.58 -1.4
55,220 + Ac3H11_3838 0.58 -2.2
55,220 + Ac3H11_3838 0.58 -0.8
55,220 + Ac3H11_3838 0.58 -0.5
55,220 + Ac3H11_3838 0.58 -2.1
55,220 + Ac3H11_3838 0.58 -2.9
55,220 + Ac3H11_3838 0.58 -3.1
55,220 + Ac3H11_3838 0.58 -2.6
55,220 + Ac3H11_3838 0.58 +0.0
55,221 - Ac3H11_3838 0.58 -2.5
55,221 - Ac3H11_3838 0.58 -1.3
55,221 - Ac3H11_3838 0.58 -1.4
55,221 - Ac3H11_3838 0.58 -2.3
55,221 - Ac3H11_3838 0.58 -0.6
55,221 - Ac3H11_3838 0.58 -0.1
55,221 - Ac3H11_3838 0.58 -1.2
55,558 + -0.5
55,594 + -2.7
55,595 - +1.4
55,595 - +4.6
55,595 - -1.9
55,682 + +3.2
55,682 + +3.1
55,682 + +2.2
55,683 - +0.1
55,683 - -1.1
55,686 + +4.2
55,686 + +2.3
55,686 + +3.0
55,687 - +0.1
55,687 - -2.4
55,687 - -1.5
55,695 + +3.6

Or see this region's nucleotide sequence