Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3224 and Ac3H11_3225 are separated by 77 nucleotides Ac3H11_3225 and Ac3H11_3226 are separated by 143 nucleotides Ac3H11_3226 and Ac3H11_3227 are separated by 46 nucleotides
Ac3H11_3224 - hypothetical protein, at 132,508 to 132,795
_3224
Ac3H11_3225 - hypothetical protein, at 132,873 to 133,166
_3225
Ac3H11_3226 - gluconate TRAP transporter, periplasmic solute-binding component <small>(from data)</small>, at 133,310 to 134,329
_3226
Ac3H11_3227 - gluconate TRAP transporter, large permease component <small>(from data)</small>, at 134,376 to 135,680
_3227
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 132.706 kb on + strand, within Ac3H11_3224 at 132.706 kb on + strand, within Ac3H11_3224 at 132.706 kb on + strand, within Ac3H11_3224 at 132.706 kb on + strand, within Ac3H11_3224 at 132.706 kb on + strand, within Ac3H11_3224 at 132.793 kb on + strand at 132.793 kb on + strand at 132.793 kb on + strand at 132.833 kb on + strand at 132.833 kb on + strand at 132.834 kb on - strand at 132.834 kb on - strand at 132.834 kb on - strand at 132.834 kb on - strand at 133.071 kb on + strand, within Ac3H11_3225 at 133.071 kb on + strand, within Ac3H11_3225 at 133.072 kb on - strand, within Ac3H11_3225 at 133.072 kb on - strand, within Ac3H11_3225 at 133.072 kb on - strand, within Ac3H11_3225 at 133.164 kb on + strand at 133.164 kb on + strand at 133.164 kb on + strand at 133.305 kb on + strand at 133.305 kb on + strand at 133.305 kb on + strand at 133.305 kb on + strand at 133.305 kb on + strand at 133.305 kb on + strand at 133.305 kb on + strand at 133.305 kb on + strand at 133.306 kb on - strand at 133.306 kb on - strand at 133.306 kb on - strand at 133.306 kb on - strand at 133.306 kb on - strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.311 kb on + strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.312 kb on - strand at 133.584 kb on + strand, within Ac3H11_3226 at 133.591 kb on + strand, within Ac3H11_3226 at 133.592 kb on - strand, within Ac3H11_3226 at 133.592 kb on - strand, within Ac3H11_3226 at 133.617 kb on + strand, within Ac3H11_3226 at 133.617 kb on + strand, within Ac3H11_3226 at 133.618 kb on - strand, within Ac3H11_3226 at 133.636 kb on + strand, within Ac3H11_3226 at 133.637 kb on - strand, within Ac3H11_3226 at 133.637 kb on - strand, within Ac3H11_3226 at 133.637 kb on - strand, within Ac3H11_3226 at 133.641 kb on + strand, within Ac3H11_3226 at 133.641 kb on + strand, within Ac3H11_3226 at 133.642 kb on - strand, within Ac3H11_3226 at 133.642 kb on - strand, within Ac3H11_3226 at 133.642 kb on - strand, within Ac3H11_3226 at 133.642 kb on - strand, within Ac3H11_3226 at 133.656 kb on + strand, within Ac3H11_3226 at 133.656 kb on + strand, within Ac3H11_3226 at 133.657 kb on - strand, within Ac3H11_3226 at 133.657 kb on - strand, within Ac3H11_3226 at 133.657 kb on - strand, within Ac3H11_3226 at 133.657 kb on - strand, within Ac3H11_3226 at 133.683 kb on + strand, within Ac3H11_3226 at 133.683 kb on + strand, within Ac3H11_3226 at 133.684 kb on - strand, within Ac3H11_3226 at 133.890 kb on + strand, within Ac3H11_3226 at 133.890 kb on + strand, within Ac3H11_3226 at 133.890 kb on + strand, within Ac3H11_3226 at 133.890 kb on + strand, within Ac3H11_3226 at 133.891 kb on - strand, within Ac3H11_3226 at 134.312 kb on - strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.446 kb on + strand at 134.447 kb on - strand at 134.447 kb on - strand at 134.447 kb on - strand at 134.447 kb on - strand at 134.447 kb on - strand at 134.447 kb on - strand at 134.447 kb on - strand at 134.587 kb on + strand, within Ac3H11_3227 at 134.587 kb on + strand, within Ac3H11_3227 at 134.587 kb on + strand, within Ac3H11_3227 at 134.588 kb on - strand, within Ac3H11_3227 at 134.588 kb on - strand, within Ac3H11_3227 at 134.588 kb on - strand, within Ac3H11_3227 at 134.588 kb on - strand, within Ac3H11_3227 at 134.588 kb on - strand, within Ac3H11_3227 at 134.785 kb on + strand, within Ac3H11_3227 at 134.785 kb on + strand, within Ac3H11_3227 at 134.785 kb on + strand, within Ac3H11_3227 at 134.785 kb on + strand, within Ac3H11_3227 at 134.785 kb on + strand, within Ac3H11_3227 at 134.785 kb on + strand, within Ac3H11_3227 at 134.786 kb on - strand, within Ac3H11_3227 at 134.786 kb on - strand, within Ac3H11_3227 at 134.786 kb on - strand, within Ac3H11_3227 at 134.786 kb on - strand, within Ac3H11_3227 at 134.786 kb on - strand, within Ac3H11_3227 at 134.786 kb on - strand, within Ac3H11_3227 at 134.860 kb on + strand, within Ac3H11_3227 at 134.860 kb on + strand, within Ac3H11_3227 at 134.860 kb on + strand, within Ac3H11_3227 at 134.860 kb on + strand, within Ac3H11_3227 at 134.861 kb on - strand, within Ac3H11_3227 at 134.861 kb on - strand, within Ac3H11_3227 at 134.861 kb on - strand, within Ac3H11_3227 at 134.861 kb on - strand, within Ac3H11_3227 at 134.861 kb on - strand, within Ac3H11_3227 at 134.861 kb on - strand, within Ac3H11_3227 at 134.861 kb on - strand, within Ac3H11_3227 at 134.914 kb on + strand, within Ac3H11_3227 at 134.914 kb on + strand, within Ac3H11_3227 at 134.915 kb on - strand, within Ac3H11_3227 at 134.915 kb on - strand, within Ac3H11_3227 at 134.915 kb on - strand, within Ac3H11_3227 at 134.915 kb on - strand, within Ac3H11_3227 at 134.915 kb on - strand, within Ac3H11_3227 at 134.915 kb on - strand, within Ac3H11_3227 at 135.060 kb on + strand, within Ac3H11_3227 at 135.060 kb on + strand, within Ac3H11_3227 at 135.061 kb on - strand, within Ac3H11_3227 at 135.161 kb on + strand, within Ac3H11_3227 at 135.161 kb on + strand, within Ac3H11_3227 at 135.161 kb on + strand, within Ac3H11_3227 at 135.162 kb on - strand, within Ac3H11_3227 at 135.162 kb on - strand, within Ac3H11_3227 at 135.162 kb on - strand, within Ac3H11_3227 at 135.178 kb on + strand, within Ac3H11_3227 at 135.178 kb on + strand, within Ac3H11_3227 at 135.179 kb on - strand, within Ac3H11_3227 at 135.179 kb on - strand, within Ac3H11_3227 at 135.179 kb on - strand, within Ac3H11_3227 at 135.179 kb on - strand, within Ac3H11_3227
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 132,706 + Ac3H11_3224 0.69 -3.1 132,706 + Ac3H11_3224 0.69 -3.0 132,706 + Ac3H11_3224 0.69 -2.9 132,706 + Ac3H11_3224 0.69 -1.4 132,706 + Ac3H11_3224 0.69 -3.0 132,793 + -0.5 132,793 + -0.5 132,793 + -1.5 132,833 + -1.4 132,833 + -2.2 132,834 - -3.1 132,834 - -0.6 132,834 - -1.5 132,834 - -2.0 133,071 + Ac3H11_3225 0.67 -3.0 133,071 + Ac3H11_3225 0.67 -2.3 133,072 - Ac3H11_3225 0.68 -1.6 133,072 - Ac3H11_3225 0.68 -3.1 133,072 - Ac3H11_3225 0.68 -1.1 133,164 + -0.3 133,164 + -2.5 133,164 + -0.8 133,305 + +0.5 133,305 + -0.5 133,305 + -1.7 133,305 + +1.5 133,305 + +1.0 133,305 + +2.9 133,305 + +2.1 133,305 + -2.0 133,306 - -1.1 133,306 - +0.2 133,306 - -0.3 133,306 - -0.8 133,306 - +0.3 133,311 + +1.5 133,311 + -1.7 133,311 + +2.0 133,311 + -2.3 133,311 + -1.5 133,311 + +3.2 133,311 + +0.1 133,311 + +1.5 133,311 + +1.0 133,311 + -0.1 133,311 + -1.4 133,311 + -1.1 133,311 + +1.5 133,312 - -3.1 133,312 - -1.4 133,312 - +0.8 133,312 - -0.5 133,312 - +2.6 133,312 - -0.9 133,312 - +1.5 133,312 - +0.6 133,312 - -0.4 133,312 - -0.8 133,312 - +0.2 133,312 - +0.3 133,312 - +0.5 133,312 - +2.0 133,312 - +0.9 133,312 - -0.0 133,584 + Ac3H11_3226 0.27 +0.4 133,591 + Ac3H11_3226 0.28 -1.9 133,592 - Ac3H11_3226 0.28 +1.3 133,592 - Ac3H11_3226 0.28 +0.9 133,617 + Ac3H11_3226 0.30 +2.4 133,617 + Ac3H11_3226 0.30 +0.0 133,618 - Ac3H11_3226 0.30 +1.5 133,636 + Ac3H11_3226 0.32 +1.4 133,637 - Ac3H11_3226 0.32 +0.4 133,637 - Ac3H11_3226 0.32 +0.7 133,637 - Ac3H11_3226 0.32 +1.9 133,641 + Ac3H11_3226 0.32 -1.2 133,641 + Ac3H11_3226 0.32 +0.9 133,642 - Ac3H11_3226 0.33 -1.4 133,642 - Ac3H11_3226 0.33 -0.2 133,642 - Ac3H11_3226 0.33 -0.3 133,642 - Ac3H11_3226 0.33 -1.9 133,656 + Ac3H11_3226 0.34 -1.7 133,656 + Ac3H11_3226 0.34 +1.8 133,657 - Ac3H11_3226 0.34 -0.8 133,657 - Ac3H11_3226 0.34 +3.6 133,657 - Ac3H11_3226 0.34 +0.3 133,657 - Ac3H11_3226 0.34 +0.1 133,683 + Ac3H11_3226 0.37 +1.3 133,683 + Ac3H11_3226 0.37 +0.5 133,684 - Ac3H11_3226 0.37 -0.1 133,890 + Ac3H11_3226 0.57 +1.1 133,890 + Ac3H11_3226 0.57 +0.5 133,890 + Ac3H11_3226 0.57 -0.1 133,890 + Ac3H11_3226 0.57 -1.2 133,891 - Ac3H11_3226 0.57 +2.9 134,312 - +0.4 134,446 + -0.3 134,446 + -0.2 134,446 + -2.9 134,446 + +0.9 134,446 + +0.3 134,446 + +0.2 134,446 + +1.2 134,446 + +1.1 134,446 + +1.3 134,446 + -0.1 134,446 + +1.6 134,446 + +1.4 134,446 + +2.2 134,446 + +0.0 134,446 + +1.1 134,446 + -1.4 134,447 - -2.2 134,447 - -0.9 134,447 - +1.0 134,447 - -0.2 134,447 - +1.1 134,447 - +1.4 134,447 - +1.1 134,587 + Ac3H11_3227 0.16 -1.8 134,587 + Ac3H11_3227 0.16 -2.7 134,587 + Ac3H11_3227 0.16 -0.6 134,588 - Ac3H11_3227 0.16 -1.6 134,588 - Ac3H11_3227 0.16 -0.3 134,588 - Ac3H11_3227 0.16 +0.1 134,588 - Ac3H11_3227 0.16 +1.2 134,588 - Ac3H11_3227 0.16 -0.5 134,785 + Ac3H11_3227 0.31 +1.7 134,785 + Ac3H11_3227 0.31 -1.5 134,785 + Ac3H11_3227 0.31 +0.9 134,785 + Ac3H11_3227 0.31 +0.9 134,785 + Ac3H11_3227 0.31 -2.3 134,785 + Ac3H11_3227 0.31 -0.4 134,786 - Ac3H11_3227 0.31 +0.5 134,786 - Ac3H11_3227 0.31 +0.2 134,786 - Ac3H11_3227 0.31 -2.4 134,786 - Ac3H11_3227 0.31 -0.7 134,786 - Ac3H11_3227 0.31 +1.2 134,786 - Ac3H11_3227 0.31 +0.8 134,860 + Ac3H11_3227 0.37 -0.3 134,860 + Ac3H11_3227 0.37 -0.9 134,860 + Ac3H11_3227 0.37 -0.8 134,860 + Ac3H11_3227 0.37 -0.9 134,861 - Ac3H11_3227 0.37 +0.2 134,861 - Ac3H11_3227 0.37 -0.3 134,861 - Ac3H11_3227 0.37 +2.2 134,861 - Ac3H11_3227 0.37 -0.1 134,861 - Ac3H11_3227 0.37 +2.2 134,861 - Ac3H11_3227 0.37 +1.2 134,861 - Ac3H11_3227 0.37 +0.6 134,914 + Ac3H11_3227 0.41 +1.8 134,914 + Ac3H11_3227 0.41 +0.9 134,915 - Ac3H11_3227 0.41 -0.1 134,915 - Ac3H11_3227 0.41 +0.5 134,915 - Ac3H11_3227 0.41 -2.4 134,915 - Ac3H11_3227 0.41 -0.9 134,915 - Ac3H11_3227 0.41 +0.2 134,915 - Ac3H11_3227 0.41 +1.0 135,060 + Ac3H11_3227 0.52 -2.9 135,060 + Ac3H11_3227 0.52 -1.8 135,061 - Ac3H11_3227 0.52 -1.3 135,161 + Ac3H11_3227 0.60 -0.0 135,161 + Ac3H11_3227 0.60 -2.1 135,161 + Ac3H11_3227 0.60 +0.8 135,162 - Ac3H11_3227 0.60 +0.0 135,162 - Ac3H11_3227 0.60 +2.2 135,162 - Ac3H11_3227 0.60 -1.4 135,178 + Ac3H11_3227 0.61 +1.7 135,178 + Ac3H11_3227 0.61 -1.9 135,179 - Ac3H11_3227 0.62 -0.4 135,179 - Ac3H11_3227 0.62 -0.7 135,179 - Ac3H11_3227 0.62 +1.6 135,179 - Ac3H11_3227 0.62 +1.4
Or see this region's nucleotide sequence