Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3220

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3218 and Ac3H11_3219 are separated by 310 nucleotidesAc3H11_3219 and Ac3H11_3220 are separated by 54 nucleotidesAc3H11_3220 and Ac3H11_3221 are separated by 66 nucleotides Ac3H11_3218 - Response regulator NasT, at 126,866 to 127,504 _3218 Ac3H11_3219 - hypothetical protein, at 127,815 to 127,949 _3219 Ac3H11_3220 - Nitrate ABC transporter, nitrate-binding protein, at 128,004 to 129,248 _3220 Ac3H11_3221 - Cyanate ABC transporter, permease protein, at 129,315 to 130,289 _3221 Position (kb) 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 127.223 kb on + strand, within Ac3H11_3218at 127.223 kb on + strand, within Ac3H11_3218at 127.224 kb on - strand, within Ac3H11_3218at 127.502 kb on + strandat 127.982 kb on + strandat 127.982 kb on + strandat 127.983 kb on - strandat 127.983 kb on - strandat 128.214 kb on + strand, within Ac3H11_3220at 128.215 kb on - strand, within Ac3H11_3220at 128.215 kb on - strand, within Ac3H11_3220at 128.308 kb on - strand, within Ac3H11_3220at 128.319 kb on + strand, within Ac3H11_3220at 128.320 kb on - strand, within Ac3H11_3220at 128.320 kb on - strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.532 kb on + strand, within Ac3H11_3220at 128.532 kb on + strand, within Ac3H11_3220at 128.532 kb on + strand, within Ac3H11_3220at 128.533 kb on - strand, within Ac3H11_3220at 128.533 kb on - strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 129.006 kb on + strand, within Ac3H11_3220at 129.006 kb on + strand, within Ac3H11_3220at 129.006 kb on + strand, within Ac3H11_3220at 129.007 kb on - strand, within Ac3H11_3220at 129.007 kb on - strand, within Ac3H11_3220at 129.075 kb on + strand, within Ac3H11_3220at 129.076 kb on - strand, within Ac3H11_3220at 129.114 kb on + strand, within Ac3H11_3220at 129.114 kb on + strand, within Ac3H11_3220at 129.114 kb on + strand, within Ac3H11_3220at 129.114 kb on + strand, within Ac3H11_3220at 129.115 kb on - strand, within Ac3H11_3220at 129.115 kb on - strand, within Ac3H11_3220at 129.115 kb on - strand, within Ac3H11_3220at 129.115 kb on - strand, within Ac3H11_3220at 129.194 kb on - strandat 129.194 kb on - strandat 129.194 kb on - strandat 129.220 kb on - strandat 129.260 kb on - strandat 129.403 kb on + strandat 129.664 kb on - strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.979 kb on - strand, within Ac3H11_3221at 129.979 kb on - strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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127,223 + Ac3H11_3218 0.56 -3.4
127,223 + Ac3H11_3218 0.56 -1.4
127,224 - Ac3H11_3218 0.56 +0.9
127,502 + -0.9
127,982 + +4.5
127,982 + -3.7
127,983 - +0.2
127,983 - -2.3
128,214 + Ac3H11_3220 0.17 +2.2
128,215 - Ac3H11_3220 0.17 +0.6
128,215 - Ac3H11_3220 0.17 +1.6
128,308 - Ac3H11_3220 0.24 -2.7
128,319 + Ac3H11_3220 0.25 +2.6
128,320 - Ac3H11_3220 0.25 -2.6
128,320 - Ac3H11_3220 0.25 +1.3
128,481 + Ac3H11_3220 0.38 -0.9
128,481 + Ac3H11_3220 0.38 -0.4
128,481 + Ac3H11_3220 0.38 +2.9
128,481 + Ac3H11_3220 0.38 +1.8
128,481 + Ac3H11_3220 0.38 +0.5
128,482 - Ac3H11_3220 0.38 +1.9
128,482 - Ac3H11_3220 0.38 +0.8
128,482 - Ac3H11_3220 0.38 +1.1
128,482 - Ac3H11_3220 0.38 -1.6
128,482 - Ac3H11_3220 0.38 -3.0
128,532 + Ac3H11_3220 0.42 +0.9
128,532 + Ac3H11_3220 0.42 +0.3
128,532 + Ac3H11_3220 0.42 -2.1
128,533 - Ac3H11_3220 0.42 +0.1
128,533 - Ac3H11_3220 0.42 -1.4
128,880 + Ac3H11_3220 0.70 -1.2
128,880 + Ac3H11_3220 0.70 +0.8
128,880 + Ac3H11_3220 0.70 -2.8
128,880 + Ac3H11_3220 0.70 -0.6
128,881 - Ac3H11_3220 0.70 -1.6
128,881 - Ac3H11_3220 0.70 -0.8
128,881 - Ac3H11_3220 0.70 +2.0
128,881 - Ac3H11_3220 0.70 +0.9
129,006 + Ac3H11_3220 0.80 -0.6
129,006 + Ac3H11_3220 0.80 +0.2
129,006 + Ac3H11_3220 0.80 +2.6
129,007 - Ac3H11_3220 0.81 -2.3
129,007 - Ac3H11_3220 0.81 +2.1
129,075 + Ac3H11_3220 0.86 -1.0
129,076 - Ac3H11_3220 0.86 +1.0
129,114 + Ac3H11_3220 0.89 +1.2
129,114 + Ac3H11_3220 0.89 +0.2
129,114 + Ac3H11_3220 0.89 +0.9
129,114 + Ac3H11_3220 0.89 +0.8
129,115 - Ac3H11_3220 0.89 -2.8
129,115 - Ac3H11_3220 0.89 -1.1
129,115 - Ac3H11_3220 0.89 -1.4
129,115 - Ac3H11_3220 0.89 +0.6
129,194 - +3.1
129,194 - -2.0
129,194 - -1.2
129,220 - +2.2
129,260 - +0.4
129,403 + +0.0
129,664 - Ac3H11_3221 0.36 -2.6
129,703 + Ac3H11_3221 0.40 +0.7
129,703 + Ac3H11_3221 0.40 -1.5
129,703 + Ac3H11_3221 0.40 +0.8
129,703 + Ac3H11_3221 0.40 +0.1
129,703 + Ac3H11_3221 0.40 -2.0
129,704 - Ac3H11_3221 0.40 +1.4
129,704 - Ac3H11_3221 0.40 -0.7
129,704 - Ac3H11_3221 0.40 +0.4
129,704 - Ac3H11_3221 0.40 +1.8
129,704 - Ac3H11_3221 0.40 -1.6
129,704 - Ac3H11_3221 0.40 -2.3
129,704 - Ac3H11_3221 0.40 -3.0
129,978 + Ac3H11_3221 0.68 -1.2
129,978 + Ac3H11_3221 0.68 -0.4
129,978 + Ac3H11_3221 0.68 +0.9
129,978 + Ac3H11_3221 0.68 -1.0
129,978 + Ac3H11_3221 0.68 -1.6
129,978 + Ac3H11_3221 0.68 +1.1
129,979 - Ac3H11_3221 0.68 +2.2
129,979 - Ac3H11_3221 0.68 +0.3
130,056 + Ac3H11_3221 0.76 +0.4
130,056 + Ac3H11_3221 0.76 +0.3
130,056 + Ac3H11_3221 0.76 +1.0
130,056 + Ac3H11_3221 0.76 -0.8
130,056 + Ac3H11_3221 0.76 -1.3
130,056 + Ac3H11_3221 0.76 +1.2
130,056 + Ac3H11_3221 0.76 -0.1
130,057 - Ac3H11_3221 0.76 +2.0
130,057 - Ac3H11_3221 0.76 +1.9
130,057 - Ac3H11_3221 0.76 +1.1
130,057 - Ac3H11_3221 0.76 +1.1
130,057 - Ac3H11_3221 0.76 +0.1
130,057 - Ac3H11_3221 0.76 -1.4
130,057 - Ac3H11_3221 0.76 +0.1
130,057 - Ac3H11_3221 0.76 +1.8

Or see this region's nucleotide sequence