Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3218 and Ac3H11_3219 are separated by 310 nucleotides Ac3H11_3219 and Ac3H11_3220 are separated by 54 nucleotides
Ac3H11_3218 - Response regulator NasT, at 126,866 to 127,504
_3218
Ac3H11_3219 - hypothetical protein, at 127,815 to 127,949
_3219
Ac3H11_3220 - Nitrate ABC transporter, nitrate-binding protein, at 128,004 to 129,248
_3220
Position (kb) 127
128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 126.877 kb on + strand at 126.878 kb on - strand at 126.878 kb on - strand at 127.223 kb on + strand, within Ac3H11_3218 at 127.223 kb on + strand, within Ac3H11_3218 at 127.224 kb on - strand, within Ac3H11_3218 at 127.502 kb on + strand at 127.982 kb on + strand at 127.982 kb on + strand at 127.983 kb on - strand at 127.983 kb on - strand at 128.214 kb on + strand, within Ac3H11_3220 at 128.215 kb on - strand, within Ac3H11_3220 at 128.215 kb on - strand, within Ac3H11_3220 at 128.308 kb on - strand, within Ac3H11_3220 at 128.319 kb on + strand, within Ac3H11_3220 at 128.320 kb on - strand, within Ac3H11_3220 at 128.320 kb on - strand, within Ac3H11_3220 at 128.481 kb on + strand, within Ac3H11_3220 at 128.481 kb on + strand, within Ac3H11_3220 at 128.481 kb on + strand, within Ac3H11_3220 at 128.481 kb on + strand, within Ac3H11_3220 at 128.481 kb on + strand, within Ac3H11_3220 at 128.482 kb on - strand, within Ac3H11_3220 at 128.482 kb on - strand, within Ac3H11_3220 at 128.482 kb on - strand, within Ac3H11_3220 at 128.482 kb on - strand, within Ac3H11_3220 at 128.482 kb on - strand, within Ac3H11_3220 at 128.532 kb on + strand, within Ac3H11_3220 at 128.532 kb on + strand, within Ac3H11_3220 at 128.532 kb on + strand, within Ac3H11_3220 at 128.533 kb on - strand, within Ac3H11_3220 at 128.533 kb on - strand, within Ac3H11_3220 at 128.880 kb on + strand, within Ac3H11_3220 at 128.880 kb on + strand, within Ac3H11_3220 at 128.880 kb on + strand, within Ac3H11_3220 at 128.880 kb on + strand, within Ac3H11_3220 at 128.881 kb on - strand, within Ac3H11_3220 at 128.881 kb on - strand, within Ac3H11_3220 at 128.881 kb on - strand, within Ac3H11_3220 at 128.881 kb on - strand, within Ac3H11_3220
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 126,877 + -0.3 126,878 - +2.7 126,878 - +2.1 127,223 + Ac3H11_3218 0.56 -3.4 127,223 + Ac3H11_3218 0.56 -1.4 127,224 - Ac3H11_3218 0.56 +0.9 127,502 + -0.9 127,982 + +4.5 127,982 + -3.7 127,983 - +0.2 127,983 - -2.3 128,214 + Ac3H11_3220 0.17 +2.2 128,215 - Ac3H11_3220 0.17 +0.6 128,215 - Ac3H11_3220 0.17 +1.6 128,308 - Ac3H11_3220 0.24 -2.7 128,319 + Ac3H11_3220 0.25 +2.6 128,320 - Ac3H11_3220 0.25 -2.6 128,320 - Ac3H11_3220 0.25 +1.3 128,481 + Ac3H11_3220 0.38 -0.9 128,481 + Ac3H11_3220 0.38 -0.4 128,481 + Ac3H11_3220 0.38 +2.9 128,481 + Ac3H11_3220 0.38 +1.8 128,481 + Ac3H11_3220 0.38 +0.5 128,482 - Ac3H11_3220 0.38 +1.9 128,482 - Ac3H11_3220 0.38 +0.8 128,482 - Ac3H11_3220 0.38 +1.1 128,482 - Ac3H11_3220 0.38 -1.6 128,482 - Ac3H11_3220 0.38 -3.0 128,532 + Ac3H11_3220 0.42 +0.9 128,532 + Ac3H11_3220 0.42 +0.3 128,532 + Ac3H11_3220 0.42 -2.1 128,533 - Ac3H11_3220 0.42 +0.1 128,533 - Ac3H11_3220 0.42 -1.4 128,880 + Ac3H11_3220 0.70 -1.2 128,880 + Ac3H11_3220 0.70 +0.8 128,880 + Ac3H11_3220 0.70 -2.8 128,880 + Ac3H11_3220 0.70 -0.6 128,881 - Ac3H11_3220 0.70 -1.6 128,881 - Ac3H11_3220 0.70 -0.8 128,881 - Ac3H11_3220 0.70 +2.0 128,881 - Ac3H11_3220 0.70 +0.9
Or see this region's nucleotide sequence