Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3169

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3168 and Ac3H11_3169 are separated by 196 nucleotidesAc3H11_3169 and Ac3H11_3170 are separated by 3 nucleotides Ac3H11_3168 - Response regulator, at 71,446 to 72,759 _3168 Ac3H11_3169 - hypothetical protein, at 72,956 to 73,075 _3169 Ac3H11_3170 - membrane protein, putative, at 73,079 to 74,716 _3170 Position (kb) 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 71.998 kb on + strand, within Ac3H11_3168at 72.125 kb on + strand, within Ac3H11_3168at 72.126 kb on - strand, within Ac3H11_3168at 72.126 kb on - strand, within Ac3H11_3168at 72.238 kb on + strand, within Ac3H11_3168at 72.239 kb on - strand, within Ac3H11_3168at 72.239 kb on - strand, within Ac3H11_3168at 72.375 kb on + strand, within Ac3H11_3168at 72.375 kb on + strand, within Ac3H11_3168at 72.375 kb on + strand, within Ac3H11_3168at 72.412 kb on + strand, within Ac3H11_3168at 72.474 kb on + strand, within Ac3H11_3168at 72.626 kb on + strand, within Ac3H11_3168at 72.627 kb on - strand, within Ac3H11_3168at 72.665 kb on + strandat 72.666 kb on - strandat 72.666 kb on - strandat 72.666 kb on - strandat 72.757 kb on + strandat 72.757 kb on + strandat 72.758 kb on - strandat 72.758 kb on - strandat 72.766 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.901 kb on - strandat 72.901 kb on - strandat 72.901 kb on - strandat 72.957 kb on + strandat 72.958 kb on - strandat 72.958 kb on - strandat 72.968 kb on + strand, within Ac3H11_3169at 73.208 kb on - strandat 73.311 kb on - strand, within Ac3H11_3170at 73.607 kb on + strand, within Ac3H11_3170at 73.725 kb on - strand, within Ac3H11_3170at 73.725 kb on - strand, within Ac3H11_3170at 73.725 kb on - strand, within Ac3H11_3170at 73.910 kb on + strand, within Ac3H11_3170at 73.910 kb on + strand, within Ac3H11_3170at 73.910 kb on + strand, within Ac3H11_3170at 73.911 kb on - strand, within Ac3H11_3170at 73.911 kb on - strand, within Ac3H11_3170at 73.911 kb on - strand, within Ac3H11_3170at 73.955 kb on + strand, within Ac3H11_3170at 73.955 kb on + strand, within Ac3H11_3170at 73.955 kb on + strand, within Ac3H11_3170at 73.956 kb on - strand, within Ac3H11_3170

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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71,998 + Ac3H11_3168 0.42 +0.1
72,125 + Ac3H11_3168 0.52 -2.8
72,126 - Ac3H11_3168 0.52 +0.3
72,126 - Ac3H11_3168 0.52 +1.5
72,238 + Ac3H11_3168 0.60 -0.5
72,239 - Ac3H11_3168 0.60 -0.8
72,239 - Ac3H11_3168 0.60 -0.5
72,375 + Ac3H11_3168 0.71 +0.7
72,375 + Ac3H11_3168 0.71 -0.1
72,375 + Ac3H11_3168 0.71 +2.0
72,412 + Ac3H11_3168 0.74 +0.8
72,474 + Ac3H11_3168 0.78 -0.5
72,626 + Ac3H11_3168 0.90 -0.8
72,627 - Ac3H11_3168 0.90 +2.2
72,665 + -2.0
72,666 - -1.8
72,666 - -1.6
72,666 - -3.7
72,757 + +0.8
72,757 + -1.7
72,758 - -0.3
72,758 - +2.4
72,766 + -1.4
72,900 + -0.3
72,900 + +1.6
72,900 + -0.6
72,900 + -0.4
72,900 + -1.3
72,900 + -1.7
72,901 - -2.7
72,901 - -1.3
72,901 - -0.4
72,957 + -2.0
72,958 - -0.7
72,958 - +0.3
72,968 + Ac3H11_3169 0.10 -0.6
73,208 - -2.0
73,311 - Ac3H11_3170 0.14 -2.5
73,607 + Ac3H11_3170 0.32 +1.5
73,725 - Ac3H11_3170 0.39 -2.8
73,725 - Ac3H11_3170 0.39 -0.2
73,725 - Ac3H11_3170 0.39 -1.9
73,910 + Ac3H11_3170 0.51 +0.6
73,910 + Ac3H11_3170 0.51 -0.9
73,910 + Ac3H11_3170 0.51 -0.7
73,911 - Ac3H11_3170 0.51 -1.6
73,911 - Ac3H11_3170 0.51 -2.3
73,911 - Ac3H11_3170 0.51 -1.0
73,955 + Ac3H11_3170 0.53 -0.1
73,955 + Ac3H11_3170 0.53 -1.9
73,955 + Ac3H11_3170 0.53 -0.0
73,956 - Ac3H11_3170 0.54 -0.1

Or see this region's nucleotide sequence