Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2560

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2559 and Ac3H11_2560 are separated by 22 nucleotidesAc3H11_2560 and Ac3H11_2561 overlap by 4 nucleotidesAc3H11_2561 and Ac3H11_2562 are separated by 112 nucleotides Ac3H11_2559 - Histidine utilization repressor, at 837,490 to 838,302 _2559 Ac3H11_2560 - ABC transporter for L-Histidine, ATPase component (from data), at 838,325 to 839,104 _2560 Ac3H11_2561 - ABC transporter for L-Histidine, permease component 2 (from data), at 839,101 to 839,859 _2561 Ac3H11_2562 - ABC transporter for L-Histidine, periplasmic substrate-binding component 2 (from data), at 839,972 to 840,937 _2562 Position (kb) 838 839 840Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 837.339 kb on + strandat 837.375 kb on - strandat 837.487 kb on + strandat 837.488 kb on - strandat 837.488 kb on - strandat 837.722 kb on + strand, within Ac3H11_2559at 837.722 kb on + strand, within Ac3H11_2559at 837.723 kb on - strand, within Ac3H11_2559at 837.911 kb on - strand, within Ac3H11_2559at 837.911 kb on - strand, within Ac3H11_2559at 837.933 kb on - strand, within Ac3H11_2559at 838.196 kb on + strand, within Ac3H11_2559at 838.197 kb on - strand, within Ac3H11_2559at 838.306 kb on - strandat 838.416 kb on + strand, within Ac3H11_2560at 838.416 kb on + strand, within Ac3H11_2560at 838.416 kb on + strand, within Ac3H11_2560at 838.417 kb on - strand, within Ac3H11_2560at 838.752 kb on + strand, within Ac3H11_2560at 838.752 kb on + strand, within Ac3H11_2560at 838.752 kb on + strand, within Ac3H11_2560at 838.753 kb on - strand, within Ac3H11_2560at 838.753 kb on - strand, within Ac3H11_2560at 838.848 kb on + strand, within Ac3H11_2560at 838.848 kb on + strand, within Ac3H11_2560at 838.848 kb on + strand, within Ac3H11_2560at 838.848 kb on + strand, within Ac3H11_2560at 838.849 kb on - strand, within Ac3H11_2560at 838.849 kb on - strand, within Ac3H11_2560at 838.849 kb on - strand, within Ac3H11_2560at 838.849 kb on - strand, within Ac3H11_2560at 838.849 kb on - strand, within Ac3H11_2560at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.697 kb on + strand, within Ac3H11_2561at 839.697 kb on + strand, within Ac3H11_2561at 839.705 kb on + strand, within Ac3H11_2561at 839.706 kb on - strand, within Ac3H11_2561at 839.706 kb on - strand, within Ac3H11_2561at 839.706 kb on - strand, within Ac3H11_2561at 839.913 kb on + strandat 839.950 kb on + strandat 839.950 kb on + strandat 839.950 kb on + strandat 839.950 kb on + strandat 839.969 kb on + strandat 839.969 kb on + strandat 839.969 kb on + strandat 839.969 kb on + strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.974 kb on - strandat 839.974 kb on - strandat 839.974 kb on - strandat 839.974 kb on - strandat 839.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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837,339 + +0.4
837,375 - +1.1
837,487 + +1.0
837,488 - -0.5
837,488 - -1.3
837,722 + Ac3H11_2559 0.29 +0.1
837,722 + Ac3H11_2559 0.29 -0.2
837,723 - Ac3H11_2559 0.29 +0.4
837,911 - Ac3H11_2559 0.52 +0.0
837,911 - Ac3H11_2559 0.52 -2.6
837,933 - Ac3H11_2559 0.54 -1.5
838,196 + Ac3H11_2559 0.87 -0.7
838,197 - Ac3H11_2559 0.87 -0.9
838,306 - -0.4
838,416 + Ac3H11_2560 0.12 +0.4
838,416 + Ac3H11_2560 0.12 -2.3
838,416 + Ac3H11_2560 0.12 -0.1
838,417 - Ac3H11_2560 0.12 +1.3
838,752 + Ac3H11_2560 0.55 -1.8
838,752 + Ac3H11_2560 0.55 -1.9
838,752 + Ac3H11_2560 0.55 -0.3
838,753 - Ac3H11_2560 0.55 -3.9
838,753 - Ac3H11_2560 0.55 -0.9
838,848 + Ac3H11_2560 0.67 -0.3
838,848 + Ac3H11_2560 0.67 -1.8
838,848 + Ac3H11_2560 0.67 -2.0
838,848 + Ac3H11_2560 0.67 +1.8
838,849 - Ac3H11_2560 0.67 +0.7
838,849 - Ac3H11_2560 0.67 +1.4
838,849 - Ac3H11_2560 0.67 -0.4
838,849 - Ac3H11_2560 0.67 +1.0
838,849 - Ac3H11_2560 0.67 -0.3
839,288 + Ac3H11_2561 0.25 +2.2
839,288 + Ac3H11_2561 0.25 -1.9
839,288 + Ac3H11_2561 0.25 -0.7
839,288 + Ac3H11_2561 0.25 -0.2
839,288 + Ac3H11_2561 0.25 +1.4
839,288 + Ac3H11_2561 0.25 +0.8
839,288 + Ac3H11_2561 0.25 -1.5
839,288 + Ac3H11_2561 0.25 +1.7
839,289 - Ac3H11_2561 0.25 +0.4
839,289 - Ac3H11_2561 0.25 +1.6
839,289 - Ac3H11_2561 0.25 -3.0
839,289 - Ac3H11_2561 0.25 -2.3
839,289 - Ac3H11_2561 0.25 +0.7
839,289 - Ac3H11_2561 0.25 +3.7
839,289 - Ac3H11_2561 0.25 -1.5
839,603 + Ac3H11_2561 0.66 -1.2
839,603 + Ac3H11_2561 0.66 +3.3
839,603 + Ac3H11_2561 0.66 +0.6
839,603 + Ac3H11_2561 0.66 -0.0
839,603 + Ac3H11_2561 0.66 +0.4
839,603 + Ac3H11_2561 0.66 +3.0
839,603 + Ac3H11_2561 0.66 +0.3
839,603 + Ac3H11_2561 0.66 -1.5
839,603 + Ac3H11_2561 0.66 +1.8
839,604 - Ac3H11_2561 0.66 +1.0
839,604 - Ac3H11_2561 0.66 -0.2
839,604 - Ac3H11_2561 0.66 +0.7
839,604 - Ac3H11_2561 0.66 -1.1
839,604 - Ac3H11_2561 0.66 -0.1
839,697 + Ac3H11_2561 0.79 +0.8
839,697 + Ac3H11_2561 0.79 -2.8
839,705 + Ac3H11_2561 0.80 +3.5
839,706 - Ac3H11_2561 0.80 -0.5
839,706 - Ac3H11_2561 0.80 -1.2
839,706 - Ac3H11_2561 0.80 -0.8
839,913 + -3.0
839,950 + +0.8
839,950 + -0.5
839,950 + -2.2
839,950 + -0.6
839,969 + +1.1
839,969 + -1.6
839,969 + -0.8
839,969 + -2.1
839,970 - +2.0
839,970 - -2.1
839,970 - +2.5
839,970 - -0.5
839,970 - -2.3
839,970 - +1.6
839,973 + +2.7
839,973 + +0.2
839,973 + -1.7
839,973 + +2.6
839,973 + -0.8
839,973 + -0.8
839,974 - -2.3
839,974 - +0.4
839,974 - -0.3
839,974 - +0.7
839,974 - -1.3

Or see this region's nucleotide sequence