Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2191

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2190 and Ac3H11_2191 are separated by 136 nucleotidesAc3H11_2191 and Ac3H11_2192 are separated by 27 nucleotides Ac3H11_2190 - Permease of the drug/metabolite transporter (DMT) superfamily, at 420,573 to 421,487 _2190 Ac3H11_2191 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 421,624 to 422,067 _2191 Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943 _2192 Position (kb) 421 422 423Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 420.752 kb on - strand, within Ac3H11_2190at 420.752 kb on - strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 421.042 kb on + strand, within Ac3H11_2190at 421.043 kb on - strand, within Ac3H11_2190at 421.195 kb on + strand, within Ac3H11_2190at 421.196 kb on - strand, within Ac3H11_2190at 421.196 kb on - strand, within Ac3H11_2190at 421.196 kb on - strand, within Ac3H11_2190at 421.231 kb on + strand, within Ac3H11_2190at 421.232 kb on - strand, within Ac3H11_2190at 421.232 kb on - strand, within Ac3H11_2190at 421.437 kb on + strandat 421.438 kb on - strandat 421.487 kb on + strandat 421.487 kb on + strandat 421.488 kb on - strandat 421.488 kb on - strandat 421.488 kb on - strandat 421.526 kb on + strandat 421.527 kb on - strandat 421.527 kb on - strandat 421.527 kb on - strandat 421.528 kb on + strandat 421.561 kb on - strandat 421.561 kb on - strandat 421.563 kb on + strandat 421.563 kb on + strandat 421.778 kb on + strand, within Ac3H11_2191at 421.804 kb on + strand, within Ac3H11_2191at 422.558 kb on + strand, within Ac3H11_2192at 422.559 kb on - strand, within Ac3H11_2192at 422.559 kb on - strand, within Ac3H11_2192at 422.559 kb on - strand, within Ac3H11_2192at 422.600 kb on + strand, within Ac3H11_2192at 422.600 kb on + strand, within Ac3H11_2192at 422.600 kb on + strand, within Ac3H11_2192at 422.601 kb on - strand, within Ac3H11_2192at 422.601 kb on - strand, within Ac3H11_2192at 422.601 kb on - strand, within Ac3H11_2192at 422.601 kb on - strand, within Ac3H11_2192at 422.732 kb on + strand, within Ac3H11_2192at 422.733 kb on - strand, within Ac3H11_2192at 422.819 kb on + strand, within Ac3H11_2192

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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420,752 - Ac3H11_2190 0.20 +0.1
420,752 - Ac3H11_2190 0.20 -0.2
420,778 + Ac3H11_2190 0.22 -1.2
420,778 + Ac3H11_2190 0.22 +3.3
420,778 + Ac3H11_2190 0.22 -0.9
420,778 + Ac3H11_2190 0.22 +1.5
420,778 + Ac3H11_2190 0.22 -1.4
420,779 - Ac3H11_2190 0.23 +0.3
420,779 - Ac3H11_2190 0.23 -0.2
420,779 - Ac3H11_2190 0.23 -0.9
420,779 - Ac3H11_2190 0.23 +1.1
420,779 - Ac3H11_2190 0.23 +0.3
420,779 - Ac3H11_2190 0.23 -0.5
420,779 - Ac3H11_2190 0.23 -3.4
420,779 - Ac3H11_2190 0.23 +5.7
420,806 - Ac3H11_2190 0.25 +0.7
420,806 - Ac3H11_2190 0.25 +1.6
420,806 - Ac3H11_2190 0.25 -0.0
420,806 - Ac3H11_2190 0.25 -0.5
420,817 + Ac3H11_2190 0.27 -0.2
420,817 + Ac3H11_2190 0.27 +0.4
420,817 + Ac3H11_2190 0.27 -0.1
420,817 + Ac3H11_2190 0.27 -0.7
420,817 + Ac3H11_2190 0.27 -0.1
420,818 - Ac3H11_2190 0.27 +1.6
420,818 - Ac3H11_2190 0.27 -0.9
420,818 - Ac3H11_2190 0.27 -0.9
420,818 - Ac3H11_2190 0.27 +1.0
420,818 - Ac3H11_2190 0.27 +0.5
420,818 - Ac3H11_2190 0.27 +0.0
420,818 - Ac3H11_2190 0.27 +0.1
420,818 - Ac3H11_2190 0.27 -1.0
420,818 - Ac3H11_2190 0.27 -0.2
420,818 - Ac3H11_2190 0.27 +0.5
420,818 - Ac3H11_2190 0.27 -0.4
420,818 - Ac3H11_2190 0.27 +0.4
421,042 + Ac3H11_2190 0.51 -1.0
421,043 - Ac3H11_2190 0.51 +1.8
421,195 + Ac3H11_2190 0.68 +0.1
421,196 - Ac3H11_2190 0.68 -2.3
421,196 - Ac3H11_2190 0.68 +0.5
421,196 - Ac3H11_2190 0.68 -0.3
421,231 + Ac3H11_2190 0.72 -1.0
421,232 - Ac3H11_2190 0.72 +0.7
421,232 - Ac3H11_2190 0.72 -0.9
421,437 + -0.6
421,438 - -3.0
421,487 + -0.7
421,487 + +2.4
421,488 - -0.5
421,488 - -0.3
421,488 - -0.5
421,526 + +0.4
421,527 - -2.8
421,527 - +1.1
421,527 - +0.2
421,528 + +0.4
421,561 - +0.2
421,561 - -0.9
421,563 + -2.7
421,563 + +1.5
421,778 + Ac3H11_2191 0.35 +0.7
421,804 + Ac3H11_2191 0.41 -0.1
422,558 + Ac3H11_2192 0.55 +0.4
422,559 - Ac3H11_2192 0.55 -1.5
422,559 - Ac3H11_2192 0.55 -0.8
422,559 - Ac3H11_2192 0.55 +2.9
422,600 + Ac3H11_2192 0.59 +1.9
422,600 + Ac3H11_2192 0.59 -0.3
422,600 + Ac3H11_2192 0.59 +1.9
422,601 - Ac3H11_2192 0.60 -0.1
422,601 - Ac3H11_2192 0.60 -0.3
422,601 - Ac3H11_2192 0.60 +0.2
422,601 - Ac3H11_2192 0.60 +0.3
422,732 + Ac3H11_2192 0.75 +1.0
422,733 - Ac3H11_2192 0.75 +1.1
422,819 + Ac3H11_2192 0.85 +1.1

Or see this region's nucleotide sequence