Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1933 and Ac3H11_1934 are separated by 131 nucleotides Ac3H11_1934 and Ac3H11_1935 are separated by 204 nucleotides
Ac3H11_1933 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 147,690 to 148,850
_1933
Ac3H11_1934 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 148,982 to 150,148
_1934
Ac3H11_1935 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 150,353 to 152,209
_1935
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 147.986 kb on - strand, within Ac3H11_1933 at 148.042 kb on + strand, within Ac3H11_1933 at 148.043 kb on - strand, within Ac3H11_1933 at 148.399 kb on + strand, within Ac3H11_1933 at 148.399 kb on + strand, within Ac3H11_1933 at 148.399 kb on + strand, within Ac3H11_1933 at 148.399 kb on + strand, within Ac3H11_1933 at 148.400 kb on - strand, within Ac3H11_1933 at 148.400 kb on - strand, within Ac3H11_1933 at 148.400 kb on - strand, within Ac3H11_1933 at 148.400 kb on - strand, within Ac3H11_1933 at 148.519 kb on + strand, within Ac3H11_1933 at 148.519 kb on + strand, within Ac3H11_1933 at 148.519 kb on + strand, within Ac3H11_1933 at 148.519 kb on + strand, within Ac3H11_1933 at 148.520 kb on - strand, within Ac3H11_1933 at 148.520 kb on - strand, within Ac3H11_1933 at 148.520 kb on - strand, within Ac3H11_1933 at 148.520 kb on - strand, within Ac3H11_1933 at 148.520 kb on - strand, within Ac3H11_1933 at 148.558 kb on + strand, within Ac3H11_1933 at 148.558 kb on + strand, within Ac3H11_1933 at 148.558 kb on + strand, within Ac3H11_1933 at 148.558 kb on + strand, within Ac3H11_1933 at 148.558 kb on + strand, within Ac3H11_1933 at 148.559 kb on - strand, within Ac3H11_1933 at 148.559 kb on - strand, within Ac3H11_1933 at 148.640 kb on - strand, within Ac3H11_1933 at 148.642 kb on + strand, within Ac3H11_1933 at 148.642 kb on + strand, within Ac3H11_1933 at 148.642 kb on + strand, within Ac3H11_1933 at 148.642 kb on + strand, within Ac3H11_1933 at 148.642 kb on + strand, within Ac3H11_1933 at 148.669 kb on + strand, within Ac3H11_1933 at 148.669 kb on + strand, within Ac3H11_1933 at 148.669 kb on + strand, within Ac3H11_1933 at 148.670 kb on - strand, within Ac3H11_1933 at 148.738 kb on + strand at 148.738 kb on + strand at 148.739 kb on - strand at 148.739 kb on - strand at 148.788 kb on - strand at 148.867 kb on - strand at 148.871 kb on - strand at 148.975 kb on + strand at 148.975 kb on + strand at 148.975 kb on + strand at 148.975 kb on + strand at 148.976 kb on - strand at 148.976 kb on - strand at 148.976 kb on - strand at 148.976 kb on - strand at 148.976 kb on - strand at 148.995 kb on + strand at 148.995 kb on + strand at 148.995 kb on + strand at 148.995 kb on + strand at 148.996 kb on - strand at 148.996 kb on - strand at 149.205 kb on + strand, within Ac3H11_1934 at 149.205 kb on + strand, within Ac3H11_1934 at 149.206 kb on - strand, within Ac3H11_1934 at 149.206 kb on - strand, within Ac3H11_1934 at 149.206 kb on - strand, within Ac3H11_1934 at 149.206 kb on - strand, within Ac3H11_1934 at 149.211 kb on + strand, within Ac3H11_1934 at 149.211 kb on + strand, within Ac3H11_1934 at 149.211 kb on + strand, within Ac3H11_1934 at 149.212 kb on - strand, within Ac3H11_1934 at 149.253 kb on + strand, within Ac3H11_1934 at 149.254 kb on - strand, within Ac3H11_1934 at 149.254 kb on - strand, within Ac3H11_1934 at 149.254 kb on - strand, within Ac3H11_1934 at 149.298 kb on + strand, within Ac3H11_1934 at 149.299 kb on - strand, within Ac3H11_1934 at 149.325 kb on + strand, within Ac3H11_1934 at 149.325 kb on + strand, within Ac3H11_1934 at 149.325 kb on + strand, within Ac3H11_1934 at 149.325 kb on + strand, within Ac3H11_1934 at 149.326 kb on - strand, within Ac3H11_1934 at 149.326 kb on - strand, within Ac3H11_1934 at 149.326 kb on - strand, within Ac3H11_1934 at 149.326 kb on - strand, within Ac3H11_1934 at 149.326 kb on - strand, within Ac3H11_1934 at 149.373 kb on + strand, within Ac3H11_1934 at 149.374 kb on - strand, within Ac3H11_1934 at 149.535 kb on + strand, within Ac3H11_1934 at 149.535 kb on + strand, within Ac3H11_1934 at 149.535 kb on + strand, within Ac3H11_1934 at 149.535 kb on + strand, within Ac3H11_1934 at 149.536 kb on - strand, within Ac3H11_1934 at 149.536 kb on - strand, within Ac3H11_1934 at 149.625 kb on + strand, within Ac3H11_1934 at 149.626 kb on - strand, within Ac3H11_1934 at 149.626 kb on - strand, within Ac3H11_1934 at 149.626 kb on - strand, within Ac3H11_1934 at 149.626 kb on - strand, within Ac3H11_1934 at 149.694 kb on + strand, within Ac3H11_1934 at 149.694 kb on + strand, within Ac3H11_1934 at 149.694 kb on + strand, within Ac3H11_1934 at 149.694 kb on + strand, within Ac3H11_1934 at 149.695 kb on - strand, within Ac3H11_1934 at 149.695 kb on - strand, within Ac3H11_1934 at 149.695 kb on - strand, within Ac3H11_1934 at 149.697 kb on + strand, within Ac3H11_1934 at 149.697 kb on + strand, within Ac3H11_1934 at 149.697 kb on + strand, within Ac3H11_1934 at 149.697 kb on + strand, within Ac3H11_1934 at 149.698 kb on - strand, within Ac3H11_1934 at 149.698 kb on - strand, within Ac3H11_1934 at 149.698 kb on - strand, within Ac3H11_1934 at 149.698 kb on - strand, within Ac3H11_1934 at 149.698 kb on - strand, within Ac3H11_1934 at 149.698 kb on - strand, within Ac3H11_1934 at 149.715 kb on + strand, within Ac3H11_1934 at 149.739 kb on + strand, within Ac3H11_1934 at 149.739 kb on + strand, within Ac3H11_1934 at 149.739 kb on + strand, within Ac3H11_1934 at 149.739 kb on + strand, within Ac3H11_1934 at 149.739 kb on + strand, within Ac3H11_1934 at 149.739 kb on + strand, within Ac3H11_1934 at 149.740 kb on - strand, within Ac3H11_1934 at 149.905 kb on - strand, within Ac3H11_1934 at 149.923 kb on + strand, within Ac3H11_1934 at 149.924 kb on - strand, within Ac3H11_1934 at 149.924 kb on - strand, within Ac3H11_1934 at 150.194 kb on - strand at 150.195 kb on + strand at 150.195 kb on + strand at 150.195 kb on + strand at 150.196 kb on - strand at 150.196 kb on - strand at 150.354 kb on + strand at 150.360 kb on + strand at 150.361 kb on - strand at 150.361 kb on - strand at 150.361 kb on - strand at 150.384 kb on + strand at 150.385 kb on - strand at 150.570 kb on + strand, within Ac3H11_1935 at 150.571 kb on - strand, within Ac3H11_1935 at 150.649 kb on - strand, within Ac3H11_1935 at 150.687 kb on + strand, within Ac3H11_1935 at 150.687 kb on + strand, within Ac3H11_1935 at 150.687 kb on + strand, within Ac3H11_1935 at 150.688 kb on - strand, within Ac3H11_1935 at 150.688 kb on - strand, within Ac3H11_1935 at 150.688 kb on - strand, within Ac3H11_1935 at 150.688 kb on - strand, within Ac3H11_1935 at 150.877 kb on - strand, within Ac3H11_1935 at 151.032 kb on - strand, within Ac3H11_1935 at 151.062 kb on + strand, within Ac3H11_1935 at 151.062 kb on + strand, within Ac3H11_1935
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 147,986 - Ac3H11_1933 0.25 +0.9 148,042 + Ac3H11_1933 0.30 +1.9 148,043 - Ac3H11_1933 0.30 -0.5 148,399 + Ac3H11_1933 0.61 +0.3 148,399 + Ac3H11_1933 0.61 +0.3 148,399 + Ac3H11_1933 0.61 +1.6 148,399 + Ac3H11_1933 0.61 -0.4 148,400 - Ac3H11_1933 0.61 -1.9 148,400 - Ac3H11_1933 0.61 -1.1 148,400 - Ac3H11_1933 0.61 -1.2 148,400 - Ac3H11_1933 0.61 -1.9 148,519 + Ac3H11_1933 0.71 -1.6 148,519 + Ac3H11_1933 0.71 +1.1 148,519 + Ac3H11_1933 0.71 +2.9 148,519 + Ac3H11_1933 0.71 +0.3 148,520 - Ac3H11_1933 0.71 -1.4 148,520 - Ac3H11_1933 0.71 -2.7 148,520 - Ac3H11_1933 0.71 +0.0 148,520 - Ac3H11_1933 0.71 +1.8 148,520 - Ac3H11_1933 0.71 +2.1 148,558 + Ac3H11_1933 0.75 -1.1 148,558 + Ac3H11_1933 0.75 -3.7 148,558 + Ac3H11_1933 0.75 +1.2 148,558 + Ac3H11_1933 0.75 -2.2 148,558 + Ac3H11_1933 0.75 -1.3 148,559 - Ac3H11_1933 0.75 -0.2 148,559 - Ac3H11_1933 0.75 -0.8 148,640 - Ac3H11_1933 0.82 +0.9 148,642 + Ac3H11_1933 0.82 -0.3 148,642 + Ac3H11_1933 0.82 +1.4 148,642 + Ac3H11_1933 0.82 +0.1 148,642 + Ac3H11_1933 0.82 -2.5 148,642 + Ac3H11_1933 0.82 -1.6 148,669 + Ac3H11_1933 0.84 -0.5 148,669 + Ac3H11_1933 0.84 +0.2 148,669 + Ac3H11_1933 0.84 +0.6 148,670 - Ac3H11_1933 0.84 -0.9 148,738 + +1.0 148,738 + -0.4 148,739 - -0.7 148,739 - -0.6 148,788 - +0.1 148,867 - -0.5 148,871 - +0.3 148,975 + +1.3 148,975 + +1.4 148,975 + -0.7 148,975 + +1.2 148,976 - -1.3 148,976 - -1.9 148,976 - -1.2 148,976 - -0.0 148,976 - +2.4 148,995 + -1.2 148,995 + -0.7 148,995 + +3.1 148,995 + -0.3 148,996 - -0.6 148,996 - +0.7 149,205 + Ac3H11_1934 0.19 -1.2 149,205 + Ac3H11_1934 0.19 -0.6 149,206 - Ac3H11_1934 0.19 +3.9 149,206 - Ac3H11_1934 0.19 -0.2 149,206 - Ac3H11_1934 0.19 -3.3 149,206 - Ac3H11_1934 0.19 -2.3 149,211 + Ac3H11_1934 0.20 -0.3 149,211 + Ac3H11_1934 0.20 -2.0 149,211 + Ac3H11_1934 0.20 -0.4 149,212 - Ac3H11_1934 0.20 -2.1 149,253 + Ac3H11_1934 0.23 +2.4 149,254 - Ac3H11_1934 0.23 -0.1 149,254 - Ac3H11_1934 0.23 +2.1 149,254 - Ac3H11_1934 0.23 +0.2 149,298 + Ac3H11_1934 0.27 +1.0 149,299 - Ac3H11_1934 0.27 +0.5 149,325 + Ac3H11_1934 0.29 +0.4 149,325 + Ac3H11_1934 0.29 -1.3 149,325 + Ac3H11_1934 0.29 -0.1 149,325 + Ac3H11_1934 0.29 +1.4 149,326 - Ac3H11_1934 0.29 -0.2 149,326 - Ac3H11_1934 0.29 +3.0 149,326 - Ac3H11_1934 0.29 +2.9 149,326 - Ac3H11_1934 0.29 -0.4 149,326 - Ac3H11_1934 0.29 +2.3 149,373 + Ac3H11_1934 0.34 +0.8 149,374 - Ac3H11_1934 0.34 -1.7 149,535 + Ac3H11_1934 0.47 -0.9 149,535 + Ac3H11_1934 0.47 -0.2 149,535 + Ac3H11_1934 0.47 +1.0 149,535 + Ac3H11_1934 0.47 -1.2 149,536 - Ac3H11_1934 0.47 +0.8 149,536 - Ac3H11_1934 0.47 +0.5 149,625 + Ac3H11_1934 0.55 -0.0 149,626 - Ac3H11_1934 0.55 +0.8 149,626 - Ac3H11_1934 0.55 -3.0 149,626 - Ac3H11_1934 0.55 -0.1 149,626 - Ac3H11_1934 0.55 +0.3 149,694 + Ac3H11_1934 0.61 -1.3 149,694 + Ac3H11_1934 0.61 -1.2 149,694 + Ac3H11_1934 0.61 -2.2 149,694 + Ac3H11_1934 0.61 -1.5 149,695 - Ac3H11_1934 0.61 +1.7 149,695 - Ac3H11_1934 0.61 +1.5 149,695 - Ac3H11_1934 0.61 +1.1 149,697 + Ac3H11_1934 0.61 -2.6 149,697 + Ac3H11_1934 0.61 -0.5 149,697 + Ac3H11_1934 0.61 -1.6 149,697 + Ac3H11_1934 0.61 +1.0 149,698 - Ac3H11_1934 0.61 +0.0 149,698 - Ac3H11_1934 0.61 +1.6 149,698 - Ac3H11_1934 0.61 +0.5 149,698 - Ac3H11_1934 0.61 -2.1 149,698 - Ac3H11_1934 0.61 -0.7 149,698 - Ac3H11_1934 0.61 +1.6 149,715 + Ac3H11_1934 0.63 -3.1 149,739 + Ac3H11_1934 0.65 +0.6 149,739 + Ac3H11_1934 0.65 -3.2 149,739 + Ac3H11_1934 0.65 -0.1 149,739 + Ac3H11_1934 0.65 +2.9 149,739 + Ac3H11_1934 0.65 +0.4 149,739 + Ac3H11_1934 0.65 +1.3 149,740 - Ac3H11_1934 0.65 +1.6 149,905 - Ac3H11_1934 0.79 -3.6 149,923 + Ac3H11_1934 0.81 -0.2 149,924 - Ac3H11_1934 0.81 +1.3 149,924 - Ac3H11_1934 0.81 +1.4 150,194 - +0.9 150,195 + -2.5 150,195 + -2.0 150,195 + -0.4 150,196 - +0.6 150,196 - +0.4 150,354 + -0.0 150,360 + -3.0 150,361 - +2.5 150,361 - -1.1 150,361 - +1.6 150,384 + +0.5 150,385 - -1.3 150,570 + Ac3H11_1935 0.12 -3.0 150,571 - Ac3H11_1935 0.12 -2.3 150,649 - Ac3H11_1935 0.16 -3.2 150,687 + Ac3H11_1935 0.18 +0.2 150,687 + Ac3H11_1935 0.18 +0.9 150,687 + Ac3H11_1935 0.18 +0.2 150,688 - Ac3H11_1935 0.18 +0.9 150,688 - Ac3H11_1935 0.18 -2.3 150,688 - Ac3H11_1935 0.18 -1.9 150,688 - Ac3H11_1935 0.18 -1.6 150,877 - Ac3H11_1935 0.28 +4.7 151,032 - Ac3H11_1935 0.37 -2.8 151,062 + Ac3H11_1935 0.38 +0.1 151,062 + Ac3H11_1935 0.38 -1.2
Or see this region's nucleotide sequence