Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1222 and Ac3H11_1223 are separated by 6 nucleotides Ac3H11_1223 and Ac3H11_1224 are separated by 18 nucleotides Ac3H11_1224 and Ac3H11_1225 are separated by 15 nucleotides Ac3H11_1225 and Ac3H11_1226 are separated by 36 nucleotides
Ac3H11_1222 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 40,823 to 41,587
_1222
Ac3H11_1223 - FIG002994: Putative transcriptional regulator, at 41,594 to 42,049
_1223
Ac3H11_1224 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 42,068 to 42,973
_1224
Ac3H11_1225 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 42,989 to 43,888
_1225
Ac3H11_1226 - Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25), at 43,925 to 44,836
_1226
Position (kb) 42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.072 kb on + strand, within Ac3H11_1222 at 41.072 kb on + strand, within Ac3H11_1222 at 41.072 kb on + strand, within Ac3H11_1222 at 41.072 kb on + strand, within Ac3H11_1222 at 41.085 kb on - strand, within Ac3H11_1222 at 41.087 kb on + strand, within Ac3H11_1222 at 41.088 kb on - strand, within Ac3H11_1222 at 41.150 kb on + strand, within Ac3H11_1222 at 41.150 kb on + strand, within Ac3H11_1222 at 41.290 kb on + strand, within Ac3H11_1222 at 41.328 kb on - strand, within Ac3H11_1222 at 41.510 kb on - strand, within Ac3H11_1222 at 41.510 kb on - strand, within Ac3H11_1222 at 41.510 kb on - strand, within Ac3H11_1222 at 41.552 kb on + strand at 41.552 kb on + strand at 41.606 kb on + strand at 41.606 kb on + strand at 41.679 kb on + strand, within Ac3H11_1223 at 41.679 kb on + strand, within Ac3H11_1223 at 41.680 kb on - strand, within Ac3H11_1223 at 41.680 kb on - strand, within Ac3H11_1223 at 41.699 kb on + strand, within Ac3H11_1223 at 41.700 kb on - strand, within Ac3H11_1223 at 41.748 kb on + strand, within Ac3H11_1223 at 41.748 kb on + strand, within Ac3H11_1223 at 41.748 kb on + strand, within Ac3H11_1223 at 41.963 kb on + strand, within Ac3H11_1223 at 41.964 kb on - strand, within Ac3H11_1223 at 41.987 kb on + strand, within Ac3H11_1223 at 42.122 kb on + strand at 42.123 kb on - strand at 42.171 kb on + strand, within Ac3H11_1224 at 42.172 kb on - strand, within Ac3H11_1224 at 42.192 kb on + strand, within Ac3H11_1224 at 42.232 kb on - strand, within Ac3H11_1224 at 42.254 kb on + strand, within Ac3H11_1224 at 42.381 kb on + strand, within Ac3H11_1224 at 42.381 kb on + strand, within Ac3H11_1224 at 42.382 kb on - strand, within Ac3H11_1224 at 42.382 kb on - strand, within Ac3H11_1224 at 42.444 kb on + strand, within Ac3H11_1224 at 42.444 kb on + strand, within Ac3H11_1224 at 42.445 kb on - strand, within Ac3H11_1224 at 42.445 kb on - strand, within Ac3H11_1224 at 42.578 kb on + strand, within Ac3H11_1224 at 42.578 kb on + strand, within Ac3H11_1224 at 42.579 kb on - strand, within Ac3H11_1224 at 42.717 kb on + strand, within Ac3H11_1224 at 42.717 kb on + strand, within Ac3H11_1224 at 43.315 kb on - strand, within Ac3H11_1225 at 43.315 kb on - strand, within Ac3H11_1225 at 43.353 kb on + strand, within Ac3H11_1225 at 43.353 kb on + strand, within Ac3H11_1225 at 43.353 kb on + strand, within Ac3H11_1225 at 43.354 kb on - strand, within Ac3H11_1225 at 43.354 kb on - strand, within Ac3H11_1225 at 43.354 kb on - strand, within Ac3H11_1225 at 43.438 kb on - strand, within Ac3H11_1225 at 43.471 kb on - strand, within Ac3H11_1225 at 43.710 kb on + strand, within Ac3H11_1225
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 41,072 + Ac3H11_1222 0.33 +1.1 41,072 + Ac3H11_1222 0.33 -0.5 41,072 + Ac3H11_1222 0.33 +3.3 41,072 + Ac3H11_1222 0.33 +0.7 41,085 - Ac3H11_1222 0.34 -3.6 41,087 + Ac3H11_1222 0.35 -0.2 41,088 - Ac3H11_1222 0.35 +0.1 41,150 + Ac3H11_1222 0.43 +0.9 41,150 + Ac3H11_1222 0.43 +0.1 41,290 + Ac3H11_1222 0.61 +0.7 41,328 - Ac3H11_1222 0.66 +1.0 41,510 - Ac3H11_1222 0.90 +1.8 41,510 - Ac3H11_1222 0.90 +0.2 41,510 - Ac3H11_1222 0.90 -0.5 41,552 + -2.7 41,552 + -2.3 41,606 + -3.3 41,606 + +0.6 41,679 + Ac3H11_1223 0.19 +0.6 41,679 + Ac3H11_1223 0.19 -1.1 41,680 - Ac3H11_1223 0.19 -2.2 41,680 - Ac3H11_1223 0.19 +1.2 41,699 + Ac3H11_1223 0.23 +0.7 41,700 - Ac3H11_1223 0.23 -1.8 41,748 + Ac3H11_1223 0.34 -1.2 41,748 + Ac3H11_1223 0.34 +0.9 41,748 + Ac3H11_1223 0.34 +1.1 41,963 + Ac3H11_1223 0.81 +1.6 41,964 - Ac3H11_1223 0.81 -1.5 41,987 + Ac3H11_1223 0.86 +0.0 42,122 + -2.1 42,123 - -2.3 42,171 + Ac3H11_1224 0.11 -2.2 42,172 - Ac3H11_1224 0.11 +1.4 42,192 + Ac3H11_1224 0.14 +0.6 42,232 - Ac3H11_1224 0.18 -1.6 42,254 + Ac3H11_1224 0.21 -1.9 42,381 + Ac3H11_1224 0.35 +2.3 42,381 + Ac3H11_1224 0.35 +0.4 42,382 - Ac3H11_1224 0.35 +0.6 42,382 - Ac3H11_1224 0.35 +0.0 42,444 + Ac3H11_1224 0.42 +1.4 42,444 + Ac3H11_1224 0.42 -1.4 42,445 - Ac3H11_1224 0.42 +1.3 42,445 - Ac3H11_1224 0.42 -3.6 42,578 + Ac3H11_1224 0.56 +0.6 42,578 + Ac3H11_1224 0.56 -2.2 42,579 - Ac3H11_1224 0.56 +0.4 42,717 + Ac3H11_1224 0.72 +1.5 42,717 + Ac3H11_1224 0.72 -1.7 43,315 - Ac3H11_1225 0.36 +1.0 43,315 - Ac3H11_1225 0.36 -1.7 43,353 + Ac3H11_1225 0.40 +0.7 43,353 + Ac3H11_1225 0.40 -1.9 43,353 + Ac3H11_1225 0.40 -1.7 43,354 - Ac3H11_1225 0.41 -1.3 43,354 - Ac3H11_1225 0.41 -0.1 43,354 - Ac3H11_1225 0.41 -0.6 43,438 - Ac3H11_1225 0.50 +1.2 43,471 - Ac3H11_1225 0.54 -0.9 43,710 + Ac3H11_1225 0.80 +1.1
Or see this region's nucleotide sequence