Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1220 and Ac3H11_1221 are separated by 20 nucleotides Ac3H11_1221 and Ac3H11_1222 are separated by 14 nucleotides Ac3H11_1222 and Ac3H11_1223 are separated by 6 nucleotides
Ac3H11_1220 - FIG097052: Sugar transporter, at 38,965 to 40,248
_1220
Ac3H11_1221 - FIG002577: Putative lipoprotein precursor, at 40,269 to 40,808
_1221
Ac3H11_1222 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 40,823 to 41,587
_1222
Ac3H11_1223 - FIG002994: Putative transcriptional regulator, at 41,594 to 42,049
_1223
Position (kb) 40
41 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 39.276 kb on - strand, within Ac3H11_1220 at 39.328 kb on + strand, within Ac3H11_1220 at 39.337 kb on + strand, within Ac3H11_1220 at 39.338 kb on - strand, within Ac3H11_1220 at 39.450 kb on - strand, within Ac3H11_1220 at 39.532 kb on + strand, within Ac3H11_1220 at 39.757 kb on + strand, within Ac3H11_1220 at 39.758 kb on - strand, within Ac3H11_1220 at 39.758 kb on - strand, within Ac3H11_1220 at 40.022 kb on - strand, within Ac3H11_1220 at 40.022 kb on - strand, within Ac3H11_1220 at 40.105 kb on + strand, within Ac3H11_1220 at 40.105 kb on + strand, within Ac3H11_1220 at 40.105 kb on + strand, within Ac3H11_1220 at 40.105 kb on + strand, within Ac3H11_1220 at 40.156 kb on + strand at 40.156 kb on + strand at 40.204 kb on + strand at 40.204 kb on + strand at 40.205 kb on - strand at 40.205 kb on - strand at 40.386 kb on + strand, within Ac3H11_1221 at 40.386 kb on + strand, within Ac3H11_1221 at 40.387 kb on - strand, within Ac3H11_1221 at 40.387 kb on - strand, within Ac3H11_1221 at 40.515 kb on + strand, within Ac3H11_1221 at 40.515 kb on + strand, within Ac3H11_1221 at 40.516 kb on - strand, within Ac3H11_1221 at 40.516 kb on - strand, within Ac3H11_1221 at 40.647 kb on + strand, within Ac3H11_1221 at 40.648 kb on - strand, within Ac3H11_1221 at 40.648 kb on - strand, within Ac3H11_1221 at 40.707 kb on + strand, within Ac3H11_1221 at 40.707 kb on + strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 41.072 kb on + strand, within Ac3H11_1222 at 41.072 kb on + strand, within Ac3H11_1222 at 41.072 kb on + strand, within Ac3H11_1222 at 41.072 kb on + strand, within Ac3H11_1222 at 41.085 kb on - strand, within Ac3H11_1222 at 41.087 kb on + strand, within Ac3H11_1222 at 41.088 kb on - strand, within Ac3H11_1222 at 41.150 kb on + strand, within Ac3H11_1222 at 41.150 kb on + strand, within Ac3H11_1222 at 41.290 kb on + strand, within Ac3H11_1222 at 41.328 kb on - strand, within Ac3H11_1222 at 41.510 kb on - strand, within Ac3H11_1222 at 41.510 kb on - strand, within Ac3H11_1222 at 41.510 kb on - strand, within Ac3H11_1222 at 41.552 kb on + strand at 41.552 kb on + strand at 41.606 kb on + strand at 41.606 kb on + strand at 41.679 kb on + strand, within Ac3H11_1223 at 41.679 kb on + strand, within Ac3H11_1223 at 41.680 kb on - strand, within Ac3H11_1223 at 41.680 kb on - strand, within Ac3H11_1223 at 41.699 kb on + strand, within Ac3H11_1223 at 41.700 kb on - strand, within Ac3H11_1223 at 41.748 kb on + strand, within Ac3H11_1223 at 41.748 kb on + strand, within Ac3H11_1223 at 41.748 kb on + strand, within Ac3H11_1223
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 39,276 - Ac3H11_1220 0.24 -2.3 39,328 + Ac3H11_1220 0.28 -2.5 39,337 + Ac3H11_1220 0.29 -2.5 39,338 - Ac3H11_1220 0.29 +0.4 39,450 - Ac3H11_1220 0.38 +2.7 39,532 + Ac3H11_1220 0.44 -0.4 39,757 + Ac3H11_1220 0.62 -1.5 39,758 - Ac3H11_1220 0.62 +0.0 39,758 - Ac3H11_1220 0.62 -0.2 40,022 - Ac3H11_1220 0.82 +1.1 40,022 - Ac3H11_1220 0.82 -0.3 40,105 + Ac3H11_1220 0.89 -2.1 40,105 + Ac3H11_1220 0.89 -1.4 40,105 + Ac3H11_1220 0.89 +1.5 40,105 + Ac3H11_1220 0.89 +1.4 40,156 + -0.5 40,156 + -0.9 40,204 + +0.2 40,204 + +2.4 40,205 - -2.6 40,205 - +0.3 40,386 + Ac3H11_1221 0.22 -0.4 40,386 + Ac3H11_1221 0.22 -0.2 40,387 - Ac3H11_1221 0.22 -1.1 40,387 - Ac3H11_1221 0.22 +0.8 40,515 + Ac3H11_1221 0.46 +0.4 40,515 + Ac3H11_1221 0.46 +0.9 40,516 - Ac3H11_1221 0.46 +3.1 40,516 - Ac3H11_1221 0.46 +0.5 40,647 + Ac3H11_1221 0.70 -1.6 40,648 - Ac3H11_1221 0.70 -4.0 40,648 - Ac3H11_1221 0.70 -1.3 40,707 + Ac3H11_1221 0.81 +1.7 40,707 + Ac3H11_1221 0.81 -2.2 40,708 - Ac3H11_1221 0.81 -0.0 40,708 - Ac3H11_1221 0.81 +0.0 40,708 - Ac3H11_1221 0.81 -3.4 40,708 - Ac3H11_1221 0.81 +0.1 40,708 - Ac3H11_1221 0.81 +0.4 41,072 + Ac3H11_1222 0.33 +1.1 41,072 + Ac3H11_1222 0.33 -0.5 41,072 + Ac3H11_1222 0.33 +3.3 41,072 + Ac3H11_1222 0.33 +0.7 41,085 - Ac3H11_1222 0.34 -3.6 41,087 + Ac3H11_1222 0.35 -0.2 41,088 - Ac3H11_1222 0.35 +0.1 41,150 + Ac3H11_1222 0.43 +0.9 41,150 + Ac3H11_1222 0.43 +0.1 41,290 + Ac3H11_1222 0.61 +0.7 41,328 - Ac3H11_1222 0.66 +1.0 41,510 - Ac3H11_1222 0.90 +1.8 41,510 - Ac3H11_1222 0.90 +0.2 41,510 - Ac3H11_1222 0.90 -0.5 41,552 + -2.7 41,552 + -2.3 41,606 + -3.3 41,606 + +0.6 41,679 + Ac3H11_1223 0.19 +0.6 41,679 + Ac3H11_1223 0.19 -1.1 41,680 - Ac3H11_1223 0.19 -2.2 41,680 - Ac3H11_1223 0.19 +1.2 41,699 + Ac3H11_1223 0.23 +0.7 41,700 - Ac3H11_1223 0.23 -1.8 41,748 + Ac3H11_1223 0.34 -1.2 41,748 + Ac3H11_1223 0.34 +0.9 41,748 + Ac3H11_1223 0.34 +1.1
Or see this region's nucleotide sequence