Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1178 and Ac3H11_1179 are separated by 9 nucleotides Ac3H11_1179 and Ac3H11_1180 are separated by 18 nucleotides
Ac3H11_1178 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 15,428 to 16,747
_1178
Ac3H11_1179 - putative exported protein, at 16,757 to 17,734
_1179
Ac3H11_1180 - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases, at 17,753 to 18,691
_1180
Position (kb)
16
17
18 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 15.837 kb on - strand, within Ac3H11_1178 at 15.837 kb on - strand, within Ac3H11_1178 at 15.920 kb on + strand, within Ac3H11_1178 at 15.921 kb on - strand, within Ac3H11_1178 at 15.999 kb on - strand, within Ac3H11_1178 at 15.999 kb on - strand, within Ac3H11_1178 at 15.999 kb on - strand, within Ac3H11_1178 at 16.019 kb on + strand, within Ac3H11_1178 at 16.054 kb on + strand, within Ac3H11_1178 at 16.055 kb on - strand, within Ac3H11_1178 at 16.142 kb on + strand, within Ac3H11_1178 at 16.143 kb on - strand, within Ac3H11_1178 at 16.143 kb on - strand, within Ac3H11_1178 at 16.143 kb on - strand, within Ac3H11_1178 at 16.386 kb on - strand, within Ac3H11_1178 at 16.415 kb on + strand, within Ac3H11_1178 at 16.415 kb on + strand, within Ac3H11_1178 at 16.416 kb on - strand, within Ac3H11_1178 at 16.416 kb on - strand, within Ac3H11_1178 at 16.416 kb on - strand, within Ac3H11_1178 at 16.601 kb on + strand, within Ac3H11_1178 at 16.601 kb on + strand, within Ac3H11_1178 at 16.601 kb on + strand, within Ac3H11_1178 at 16.601 kb on + strand, within Ac3H11_1178 at 16.602 kb on - strand, within Ac3H11_1178 at 16.602 kb on - strand, within Ac3H11_1178 at 16.602 kb on - strand, within Ac3H11_1178 at 16.602 kb on - strand, within Ac3H11_1178 at 16.646 kb on + strand at 16.646 kb on + strand at 16.646 kb on + strand at 16.646 kb on + strand at 16.647 kb on - strand at 16.647 kb on - strand at 18.143 kb on + strand, within Ac3H11_1180 at 18.143 kb on + strand, within Ac3H11_1180 at 18.144 kb on - strand, within Ac3H11_1180 at 18.179 kb on + strand, within Ac3H11_1180 at 18.179 kb on + strand, within Ac3H11_1180 at 18.450 kb on - strand, within Ac3H11_1180 at 18.642 kb on - strand at 18.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 15,837 - Ac3H11_1178 0.31 -1.1 15,837 - Ac3H11_1178 0.31 -2.4 15,920 + Ac3H11_1178 0.37 -1.7 15,921 - Ac3H11_1178 0.37 +0.8 15,999 - Ac3H11_1178 0.43 +0.6 15,999 - Ac3H11_1178 0.43 -2.2 15,999 - Ac3H11_1178 0.43 +0.7 16,019 + Ac3H11_1178 0.45 -0.7 16,054 + Ac3H11_1178 0.47 -1.5 16,055 - Ac3H11_1178 0.47 -1.5 16,142 + Ac3H11_1178 0.54 +2.9 16,143 - Ac3H11_1178 0.54 +0.6 16,143 - Ac3H11_1178 0.54 +2.0 16,143 - Ac3H11_1178 0.54 +1.5 16,386 - Ac3H11_1178 0.73 +1.6 16,415 + Ac3H11_1178 0.75 +0.7 16,415 + Ac3H11_1178 0.75 +2.1 16,416 - Ac3H11_1178 0.75 +2.7 16,416 - Ac3H11_1178 0.75 +1.7 16,416 - Ac3H11_1178 0.75 +0.1 16,601 + Ac3H11_1178 0.89 -1.0 16,601 + Ac3H11_1178 0.89 -3.2 16,601 + Ac3H11_1178 0.89 -0.7 16,601 + Ac3H11_1178 0.89 -1.6 16,602 - Ac3H11_1178 0.89 +0.7 16,602 - Ac3H11_1178 0.89 +4.5 16,602 - Ac3H11_1178 0.89 +2.0 16,602 - Ac3H11_1178 0.89 +1.8 16,646 + -2.0 16,646 + -2.2 16,646 + +0.9 16,646 + +0.7 16,647 - -1.0 16,647 - -1.7 18,143 + Ac3H11_1180 0.42 -3.2 18,143 + Ac3H11_1180 0.42 +0.8 18,144 - Ac3H11_1180 0.42 -1.1 18,179 + Ac3H11_1180 0.45 +1.7 18,179 + Ac3H11_1180 0.45 +1.8 18,450 - Ac3H11_1180 0.74 -0.6 18,642 - +1.1 18,642 - -0.5
Or see this region's nucleotide sequence