Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1179

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1178 and Ac3H11_1179 are separated by 9 nucleotidesAc3H11_1179 and Ac3H11_1180 are separated by 18 nucleotides Ac3H11_1178 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 15,428 to 16,747 _1178 Ac3H11_1179 - putative exported protein, at 16,757 to 17,734 _1179 Ac3H11_1180 - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases, at 17,753 to 18,691 _1180 Position (kb) 16 17 18Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 15.837 kb on - strand, within Ac3H11_1178at 15.837 kb on - strand, within Ac3H11_1178at 15.920 kb on + strand, within Ac3H11_1178at 15.921 kb on - strand, within Ac3H11_1178at 15.999 kb on - strand, within Ac3H11_1178at 15.999 kb on - strand, within Ac3H11_1178at 15.999 kb on - strand, within Ac3H11_1178at 16.019 kb on + strand, within Ac3H11_1178at 16.054 kb on + strand, within Ac3H11_1178at 16.055 kb on - strand, within Ac3H11_1178at 16.142 kb on + strand, within Ac3H11_1178at 16.143 kb on - strand, within Ac3H11_1178at 16.143 kb on - strand, within Ac3H11_1178at 16.143 kb on - strand, within Ac3H11_1178at 16.386 kb on - strand, within Ac3H11_1178at 16.415 kb on + strand, within Ac3H11_1178at 16.415 kb on + strand, within Ac3H11_1178at 16.416 kb on - strand, within Ac3H11_1178at 16.416 kb on - strand, within Ac3H11_1178at 16.416 kb on - strand, within Ac3H11_1178at 16.601 kb on + strand, within Ac3H11_1178at 16.601 kb on + strand, within Ac3H11_1178at 16.601 kb on + strand, within Ac3H11_1178at 16.601 kb on + strand, within Ac3H11_1178at 16.602 kb on - strand, within Ac3H11_1178at 16.602 kb on - strand, within Ac3H11_1178at 16.602 kb on - strand, within Ac3H11_1178at 16.602 kb on - strand, within Ac3H11_1178at 16.646 kb on + strandat 16.646 kb on + strandat 16.646 kb on + strandat 16.646 kb on + strandat 16.647 kb on - strandat 16.647 kb on - strandat 18.143 kb on + strand, within Ac3H11_1180at 18.143 kb on + strand, within Ac3H11_1180at 18.144 kb on - strand, within Ac3H11_1180at 18.179 kb on + strand, within Ac3H11_1180at 18.179 kb on + strand, within Ac3H11_1180at 18.450 kb on - strand, within Ac3H11_1180at 18.642 kb on - strandat 18.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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15,837 - Ac3H11_1178 0.31 -1.1
15,837 - Ac3H11_1178 0.31 -2.4
15,920 + Ac3H11_1178 0.37 -1.7
15,921 - Ac3H11_1178 0.37 +0.8
15,999 - Ac3H11_1178 0.43 +0.6
15,999 - Ac3H11_1178 0.43 -2.2
15,999 - Ac3H11_1178 0.43 +0.7
16,019 + Ac3H11_1178 0.45 -0.7
16,054 + Ac3H11_1178 0.47 -1.5
16,055 - Ac3H11_1178 0.47 -1.5
16,142 + Ac3H11_1178 0.54 +2.9
16,143 - Ac3H11_1178 0.54 +0.6
16,143 - Ac3H11_1178 0.54 +2.0
16,143 - Ac3H11_1178 0.54 +1.5
16,386 - Ac3H11_1178 0.73 +1.6
16,415 + Ac3H11_1178 0.75 +0.7
16,415 + Ac3H11_1178 0.75 +2.1
16,416 - Ac3H11_1178 0.75 +2.7
16,416 - Ac3H11_1178 0.75 +1.7
16,416 - Ac3H11_1178 0.75 +0.1
16,601 + Ac3H11_1178 0.89 -1.0
16,601 + Ac3H11_1178 0.89 -3.2
16,601 + Ac3H11_1178 0.89 -0.7
16,601 + Ac3H11_1178 0.89 -1.6
16,602 - Ac3H11_1178 0.89 +0.7
16,602 - Ac3H11_1178 0.89 +4.5
16,602 - Ac3H11_1178 0.89 +2.0
16,602 - Ac3H11_1178 0.89 +1.8
16,646 + -2.0
16,646 + -2.2
16,646 + +0.9
16,646 + +0.7
16,647 - -1.0
16,647 - -1.7
18,143 + Ac3H11_1180 0.42 -3.2
18,143 + Ac3H11_1180 0.42 +0.8
18,144 - Ac3H11_1180 0.42 -1.1
18,179 + Ac3H11_1180 0.45 +1.7
18,179 + Ac3H11_1180 0.45 +1.8
18,450 - Ac3H11_1180 0.74 -0.6
18,642 - +1.1
18,642 - -0.5

Or see this region's nucleotide sequence