Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1502

Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1500 and clpP are separated by 204 nucleotidesclpP and DVU1502 overlap by 8 nucleotidesDVU1502 and DVU1503 overlap by 1 nucleotides DVU1500: DVU1500 - major capsid protein, HK97 family (TIGR), at 1,574,826 to 1,576,022 DVU1500 DVU1501: clpP - ClpP protease family protein (TIGR), at 1,576,227 to 1,576,961 clpP DVU1502: DVU1502 - portal protein, HK97 family (TIGR), at 1,576,954 to 1,578,213 DVU1502 DVU1503: DVU1503 - terminase, large subunit (TIGR), at 1,578,213 to 1,579,910 DVU1503 Position (kb) 1576 1577 1578 1579Strain fitness (log2 ratio) -1 0 1at 1576.060 kb on - strandat 1576.084 kb on - strandat 1576.093 kb on + strandat 1576.225 kb on + strandat 1576.238 kb on + strandat 1576.291 kb on - strandat 1576.291 kb on - strandat 1576.330 kb on + strand, within clpPat 1576.386 kb on + strand, within clpPat 1576.430 kb on - strand, within clpPat 1576.535 kb on + strand, within clpPat 1576.543 kb on - strand, within clpPat 1576.555 kb on - strand, within clpPat 1576.587 kb on - strand, within clpPat 1576.587 kb on - strand, within clpPat 1576.588 kb on + strand, within clpPat 1576.671 kb on + strand, within clpPat 1576.782 kb on + strand, within clpPat 1576.820 kb on - strand, within clpPat 1576.821 kb on - strand, within clpPat 1576.831 kb on + strand, within clpPat 1576.839 kb on - strand, within clpPat 1576.855 kb on + strand, within clpPat 1576.863 kb on + strand, within clpPat 1577.008 kb on - strandat 1577.026 kb on + strandat 1577.056 kb on + strandat 1577.068 kb on + strandat 1577.136 kb on - strand, within DVU1502at 1577.239 kb on - strand, within DVU1502at 1577.291 kb on + strand, within DVU1502at 1577.510 kb on + strand, within DVU1502at 1577.520 kb on - strand, within DVU1502at 1577.566 kb on - strand, within DVU1502at 1577.601 kb on - strand, within DVU1502at 1577.647 kb on - strand, within DVU1502at 1577.678 kb on + strand, within DVU1502at 1577.678 kb on + strand, within DVU1502at 1577.678 kb on + strand, within DVU1502at 1577.686 kb on - strand, within DVU1502at 1577.773 kb on + strand, within DVU1502at 1577.803 kb on + strand, within DVU1502at 1577.808 kb on + strand, within DVU1502at 1577.855 kb on + strand, within DVU1502at 1577.947 kb on + strand, within DVU1502at 1577.960 kb on - strand, within DVU1502at 1577.972 kb on - strand, within DVU1502at 1578.076 kb on - strand, within DVU1502at 1578.229 kb on - strandat 1578.229 kb on - strandat 1578.266 kb on + strandat 1578.274 kb on - strandat 1578.307 kb on + strandat 1578.387 kb on + strand, within DVU1503at 1578.405 kb on - strand, within DVU1503at 1578.566 kb on - strand, within DVU1503at 1578.599 kb on + strand, within DVU1503at 1578.599 kb on + strand, within DVU1503at 1578.632 kb on - strand, within DVU1503at 1578.650 kb on - strand, within DVU1503at 1578.660 kb on - strand, within DVU1503at 1578.769 kb on + strand, within DVU1503at 1578.776 kb on + strand, within DVU1503at 1578.813 kb on - strand, within DVU1503at 1578.838 kb on - strand, within DVU1503at 1578.855 kb on - strand, within DVU1503at 1578.879 kb on + strand, within DVU1503at 1579.115 kb on - strand, within DVU1503at 1579.165 kb on - strand, within DVU1503at 1579.179 kb on - strand, within DVU1503

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM)
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1,576,060 - -0.1
1,576,084 - +0.4
1,576,093 + -0.1
1,576,225 + -0.8
1,576,238 + +0.2
1,576,291 - -0.7
1,576,291 - -0.1
1,576,330 + clpP DVU1501 0.14 +1.1
1,576,386 + clpP DVU1501 0.22 -0.9
1,576,430 - clpP DVU1501 0.28 -0.0
1,576,535 + clpP DVU1501 0.42 +0.1
1,576,543 - clpP DVU1501 0.43 +0.2
1,576,555 - clpP DVU1501 0.45 +0.0
1,576,587 - clpP DVU1501 0.49 -0.1
1,576,587 - clpP DVU1501 0.49 +0.9
1,576,588 + clpP DVU1501 0.49 +0.1
1,576,671 + clpP DVU1501 0.60 -0.5
1,576,782 + clpP DVU1501 0.76 +0.6
1,576,820 - clpP DVU1501 0.81 -0.1
1,576,821 - clpP DVU1501 0.81 -0.1
1,576,831 + clpP DVU1501 0.82 -0.6
1,576,839 - clpP DVU1501 0.83 -0.4
1,576,855 + clpP DVU1501 0.85 -0.5
1,576,863 + clpP DVU1501 0.87 +0.1
1,577,008 - -0.3
1,577,026 + -1.0
1,577,056 + -0.5
1,577,068 + -0.8
1,577,136 - DVU1502 0.14 -0.7
1,577,239 - DVU1502 0.23 -0.9
1,577,291 + DVU1502 0.27 -0.7
1,577,510 + DVU1502 0.44 -0.3
1,577,520 - DVU1502 0.45 -1.2
1,577,566 - DVU1502 0.49 -0.5
1,577,601 - DVU1502 0.51 +0.2
1,577,647 - DVU1502 0.55 -0.0
1,577,678 + DVU1502 0.57 -0.3
1,577,678 + DVU1502 0.57 +0.1
1,577,678 + DVU1502 0.57 -0.6
1,577,686 - DVU1502 0.58 -0.2
1,577,773 + DVU1502 0.65 +0.5
1,577,803 + DVU1502 0.67 -0.8
1,577,808 + DVU1502 0.68 -0.8
1,577,855 + DVU1502 0.72 +0.0
1,577,947 + DVU1502 0.79 -0.4
1,577,960 - DVU1502 0.80 -1.3
1,577,972 - DVU1502 0.81 +0.1
1,578,076 - DVU1502 0.89 -1.5
1,578,229 - +0.2
1,578,229 - -0.1
1,578,266 + -0.1
1,578,274 - -0.3
1,578,307 + -0.4
1,578,387 + DVU1503 0.10 +0.2
1,578,405 - DVU1503 0.11 +0.2
1,578,566 - DVU1503 0.21 +0.4
1,578,599 + DVU1503 0.23 -0.1
1,578,599 + DVU1503 0.23 -0.4
1,578,632 - DVU1503 0.25 -0.1
1,578,650 - DVU1503 0.26 +0.7
1,578,660 - DVU1503 0.26 -0.1
1,578,769 + DVU1503 0.33 -0.6
1,578,776 + DVU1503 0.33 +0.1
1,578,813 - DVU1503 0.35 -0.3
1,578,838 - DVU1503 0.37 +0.3
1,578,855 - DVU1503 0.38 -1.6
1,578,879 + DVU1503 0.39 -0.1
1,579,115 - DVU1503 0.53 +0.1
1,579,165 - DVU1503 0.56 -0.9
1,579,179 - DVU1503 0.57 -0.1

Or see this region's nucleotide sequence