Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1500 and clpP are separated by 204 nucleotides clpP and DVU1502 overlap by 8 nucleotides DVU1502 and DVU1503 overlap by 1 nucleotides
DVU1500: DVU1500 - major capsid protein, HK97 family (TIGR), at 1,574,826 to 1,576,022
DVU1500
DVU1501: clpP - ClpP protease family protein (TIGR), at 1,576,227 to 1,576,961
clpP
DVU1502: DVU1502 - portal protein, HK97 family (TIGR), at 1,576,954 to 1,578,213
DVU1502
DVU1503: DVU1503 - terminase, large subunit (TIGR), at 1,578,213 to 1,579,910
DVU1503
Position (kb)
1576
1577
1578
1579 Strain fitness (log2 ratio)
-1
0
1 at 1576.060 kb on - strand at 1576.084 kb on - strand at 1576.093 kb on + strand at 1576.225 kb on + strand at 1576.238 kb on + strand at 1576.291 kb on - strand at 1576.291 kb on - strand at 1576.330 kb on + strand, within clpP at 1576.386 kb on + strand, within clpP at 1576.430 kb on - strand, within clpP at 1576.535 kb on + strand, within clpP at 1576.543 kb on - strand, within clpP at 1576.555 kb on - strand, within clpP at 1576.587 kb on - strand, within clpP at 1576.587 kb on - strand, within clpP at 1576.588 kb on + strand, within clpP at 1576.671 kb on + strand, within clpP at 1576.782 kb on + strand, within clpP at 1576.820 kb on - strand, within clpP at 1576.821 kb on - strand, within clpP at 1576.831 kb on + strand, within clpP at 1576.839 kb on - strand, within clpP at 1576.855 kb on + strand, within clpP at 1576.863 kb on + strand, within clpP at 1577.008 kb on - strand at 1577.026 kb on + strand at 1577.056 kb on + strand at 1577.068 kb on + strand at 1577.136 kb on - strand, within DVU1502 at 1577.239 kb on - strand, within DVU1502 at 1577.291 kb on + strand, within DVU1502 at 1577.510 kb on + strand, within DVU1502 at 1577.520 kb on - strand, within DVU1502 at 1577.566 kb on - strand, within DVU1502 at 1577.601 kb on - strand, within DVU1502 at 1577.647 kb on - strand, within DVU1502 at 1577.678 kb on + strand, within DVU1502 at 1577.678 kb on + strand, within DVU1502 at 1577.678 kb on + strand, within DVU1502 at 1577.686 kb on - strand, within DVU1502 at 1577.773 kb on + strand, within DVU1502 at 1577.803 kb on + strand, within DVU1502 at 1577.808 kb on + strand, within DVU1502 at 1577.855 kb on + strand, within DVU1502 at 1577.947 kb on + strand, within DVU1502 at 1577.960 kb on - strand, within DVU1502 at 1577.972 kb on - strand, within DVU1502 at 1578.076 kb on - strand, within DVU1502 at 1578.229 kb on - strand at 1578.229 kb on - strand at 1578.266 kb on + strand at 1578.274 kb on - strand at 1578.307 kb on + strand at 1578.387 kb on + strand, within DVU1503 at 1578.405 kb on - strand, within DVU1503 at 1578.566 kb on - strand, within DVU1503 at 1578.599 kb on + strand, within DVU1503 at 1578.599 kb on + strand, within DVU1503 at 1578.632 kb on - strand, within DVU1503 at 1578.650 kb on - strand, within DVU1503 at 1578.660 kb on - strand, within DVU1503 at 1578.769 kb on + strand, within DVU1503 at 1578.776 kb on + strand, within DVU1503 at 1578.813 kb on - strand, within DVU1503 at 1578.838 kb on - strand, within DVU1503 at 1578.855 kb on - strand, within DVU1503 at 1578.879 kb on + strand, within DVU1503 at 1579.115 kb on - strand, within DVU1503 at 1579.165 kb on - strand, within DVU1503 at 1579.179 kb on - strand, within DVU1503
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM) remove 1,576,060 - -0.1 1,576,084 - +0.4 1,576,093 + -0.1 1,576,225 + -0.8 1,576,238 + +0.2 1,576,291 - -0.7 1,576,291 - -0.1 1,576,330 + clpP DVU1501 0.14 +1.1 1,576,386 + clpP DVU1501 0.22 -0.9 1,576,430 - clpP DVU1501 0.28 -0.0 1,576,535 + clpP DVU1501 0.42 +0.1 1,576,543 - clpP DVU1501 0.43 +0.2 1,576,555 - clpP DVU1501 0.45 +0.0 1,576,587 - clpP DVU1501 0.49 -0.1 1,576,587 - clpP DVU1501 0.49 +0.9 1,576,588 + clpP DVU1501 0.49 +0.1 1,576,671 + clpP DVU1501 0.60 -0.5 1,576,782 + clpP DVU1501 0.76 +0.6 1,576,820 - clpP DVU1501 0.81 -0.1 1,576,821 - clpP DVU1501 0.81 -0.1 1,576,831 + clpP DVU1501 0.82 -0.6 1,576,839 - clpP DVU1501 0.83 -0.4 1,576,855 + clpP DVU1501 0.85 -0.5 1,576,863 + clpP DVU1501 0.87 +0.1 1,577,008 - -0.3 1,577,026 + -1.0 1,577,056 + -0.5 1,577,068 + -0.8 1,577,136 - DVU1502 0.14 -0.7 1,577,239 - DVU1502 0.23 -0.9 1,577,291 + DVU1502 0.27 -0.7 1,577,510 + DVU1502 0.44 -0.3 1,577,520 - DVU1502 0.45 -1.2 1,577,566 - DVU1502 0.49 -0.5 1,577,601 - DVU1502 0.51 +0.2 1,577,647 - DVU1502 0.55 -0.0 1,577,678 + DVU1502 0.57 -0.3 1,577,678 + DVU1502 0.57 +0.1 1,577,678 + DVU1502 0.57 -0.6 1,577,686 - DVU1502 0.58 -0.2 1,577,773 + DVU1502 0.65 +0.5 1,577,803 + DVU1502 0.67 -0.8 1,577,808 + DVU1502 0.68 -0.8 1,577,855 + DVU1502 0.72 +0.0 1,577,947 + DVU1502 0.79 -0.4 1,577,960 - DVU1502 0.80 -1.3 1,577,972 - DVU1502 0.81 +0.1 1,578,076 - DVU1502 0.89 -1.5 1,578,229 - +0.2 1,578,229 - -0.1 1,578,266 + -0.1 1,578,274 - -0.3 1,578,307 + -0.4 1,578,387 + DVU1503 0.10 +0.2 1,578,405 - DVU1503 0.11 +0.2 1,578,566 - DVU1503 0.21 +0.4 1,578,599 + DVU1503 0.23 -0.1 1,578,599 + DVU1503 0.23 -0.4 1,578,632 - DVU1503 0.25 -0.1 1,578,650 - DVU1503 0.26 +0.7 1,578,660 - DVU1503 0.26 -0.1 1,578,769 + DVU1503 0.33 -0.6 1,578,776 + DVU1503 0.33 +0.1 1,578,813 - DVU1503 0.35 -0.3 1,578,838 - DVU1503 0.37 +0.3 1,578,855 - DVU1503 0.38 -1.6 1,578,879 + DVU1503 0.39 -0.1 1,579,115 - DVU1503 0.53 +0.1 1,579,165 - DVU1503 0.56 -0.9 1,579,179 - DVU1503 0.57 -0.1
Or see this region's nucleotide sequence