Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2340

Experiment: Rifampicin 0.0001953125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfaE and engA are separated by 33 nucleotidesengA and Synpcc7942_2341 are separated by 9 nucleotides Synpcc7942_2339: rfaE - RfaE bifunctional protein, domain I, at 2,406,813 to 2,407,847 rfaE Synpcc7942_2340: engA - GTP-binding protein EngA, at 2,407,881 to 2,409,242 engA Synpcc7942_2341: Synpcc7942_2341 - cobalt transport system permease protein, at 2,409,252 to 2,410,133 _2341 Position (kb) 2407 2408 2409 2410Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2407.849 kb on - strandat 2407.851 kb on + strandat 2407.897 kb on - strandat 2409.215 kb on - strandat 2410.093 kb on + strandat 2410.108 kb on + strandat 2410.176 kb on + strandat 2410.218 kb on + strandat 2410.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0001953125 mg/ml
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2,407,849 - -0.1
2,407,851 + -0.1
2,407,897 - -3.8
2,409,215 - +1.4
2,410,093 + +1.2
2,410,108 + +1.1
2,410,176 + +0.2
2,410,218 + -1.4
2,410,226 - -0.2

Or see this region's nucleotide sequence