Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2093

Experiment: Rifampicin 0.0001953125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.0001953125 mg/ml
2,173,873	+	ndhD3	Synpcc7942_2092	0.38	-3.4
2,173,873	+	ndhD3	Synpcc7942_2092	0.38	-1.5
2,173,873	+	ndhD3	Synpcc7942_2092	0.38	-1.6
2,173,881	-	ndhD3	Synpcc7942_2092	0.39	-3.6
2,173,943	+	ndhD3	Synpcc7942_2092	0.43	-2.4
2,173,951	-	ndhD3	Synpcc7942_2092	0.44	-0.9
2,173,975	-	ndhD3	Synpcc7942_2092	0.45	-2.9
2,174,007	-	ndhD3	Synpcc7942_2092	0.47	-1.9
2,174,007	-	ndhD3	Synpcc7942_2092	0.47	-3.2
2,174,031	+	ndhD3	Synpcc7942_2092	0.49	-3.0
2,174,031	+	ndhD3	Synpcc7942_2092	0.49	-3.4
2,174,031	+	ndhD3	Synpcc7942_2092	0.49	-1.6
2,174,039	-	ndhD3	Synpcc7942_2092	0.49	-2.4
2,174,039	-	ndhD3	Synpcc7942_2092	0.49	-1.0
2,174,053	-	ndhD3	Synpcc7942_2092	0.50	-0.7
2,174,100	-	ndhD3	Synpcc7942_2092	0.53	+0.6
2,174,121	+	ndhD3	Synpcc7942_2092	0.55	-0.4
2,174,131	-	ndhD3	Synpcc7942_2092	0.55	-1.0
2,174,131	-	ndhD3	Synpcc7942_2092	0.55	-0.0
2,174,131	-	ndhD3	Synpcc7942_2092	0.55	-3.5
2,174,134	+	ndhD3	Synpcc7942_2092	0.55	-2.1
2,174,134	+	ndhD3	Synpcc7942_2092	0.55	-1.3
2,174,154	-	ndhD3	Synpcc7942_2092	0.57	-1.0
2,174,154	-	ndhD3	Synpcc7942_2092	0.57	-2.6
2,174,154	-	ndhD3	Synpcc7942_2092	0.57	-2.3
2,174,231	+	ndhD3	Synpcc7942_2092	0.62	-3.2
2,174,231	+	ndhD3	Synpcc7942_2092	0.62	-2.0
2,174,245	-	ndhD3	Synpcc7942_2092	0.63	-3.2
2,174,299	-	ndhD3	Synpcc7942_2092	0.66	-3.6
2,174,318	-	ndhD3	Synpcc7942_2092	0.67	-1.4
2,174,328	-	ndhD3	Synpcc7942_2092	0.68	-0.3
2,174,329	-	ndhD3	Synpcc7942_2092	0.68	-0.0
2,174,354	+	ndhD3	Synpcc7942_2092	0.70	-1.6
2,174,393	+	ndhD3	Synpcc7942_2092	0.72	-3.4
2,174,527	-	ndhD3	Synpcc7942_2092	0.81	-2.9
2,174,548	-	ndhD3	Synpcc7942_2092	0.82	-3.6
2,174,626	-	ndhD3	Synpcc7942_2092	0.87	+3.4
2,174,660	+	ndhD3	Synpcc7942_2092	0.89	-4.5
2,174,669	-				-2.0
2,174,669	-				-0.2
2,174,689	-				-0.0
2,174,713	+				-1.4
2,174,764	+				-0.0
2,174,795	-				+0.3
2,174,795	-				-0.5
2,174,826	-				-0.2
2,174,835	+				-3.0
2,174,872	+				-2.9
2,174,895	-				+0.4
2,174,904	+				-1.4
2,174,912	-				-3.5
2,174,919	+				-2.6
2,174,927	-				-2.4
2,174,946	-				-3.0
2,174,952	+				-1.6
2,174,960	-				-2.9
2,174,979	+				-2.4
2,175,007	+	chpY	Synpcc7942_2093	0.11	-1.0
2,175,007	+	chpY	Synpcc7942_2093	0.11	-3.4
2,175,007	+	chpY	Synpcc7942_2093	0.11	-2.5
2,175,007	+	chpY	Synpcc7942_2093	0.11	-1.9
2,175,007	+	chpY	Synpcc7942_2093	0.11	-4.0
2,175,007	+	chpY	Synpcc7942_2093	0.11	-3.6
2,175,007	+	chpY	Synpcc7942_2093	0.11	-1.3
2,175,015	-	chpY	Synpcc7942_2093	0.11	-3.4
2,175,132	-	chpY	Synpcc7942_2093	0.20	-0.0
2,175,196	+	chpY	Synpcc7942_2093	0.25	-1.0
2,175,204	-	chpY	Synpcc7942_2093	0.26	-3.6
2,175,235	+	chpY	Synpcc7942_2093	0.28	-2.4
2,175,253	+	chpY	Synpcc7942_2093	0.30	-1.2
2,175,253	-	chpY	Synpcc7942_2093	0.30	-4.0
2,175,319	+	chpY	Synpcc7942_2093	0.35	-1.6
2,175,320	+	chpY	Synpcc7942_2093	0.35	-1.2
2,175,351	+	chpY	Synpcc7942_2093	0.37	-3.2
2,175,359	-	chpY	Synpcc7942_2093	0.38	-3.4
2,175,386	+	chpY	Synpcc7942_2093	0.40	-0.8
2,175,422	+	chpY	Synpcc7942_2093	0.43	-0.0
2,175,427	+	chpY	Synpcc7942_2093	0.43	-1.0
2,175,435	-	chpY	Synpcc7942_2093	0.44	-2.2
2,175,464	-	chpY	Synpcc7942_2093	0.46	-0.0
2,175,469	-	chpY	Synpcc7942_2093	0.46	-1.6
2,175,478	-	chpY	Synpcc7942_2093	0.47	-2.4
2,175,496	+	chpY	Synpcc7942_2093	0.48	-2.2
2,175,504	-	chpY	Synpcc7942_2093	0.49	+0.4
2,175,631	-	chpY	Synpcc7942_2093	0.59	-2.9
2,175,635	+	chpY	Synpcc7942_2093	0.59	-2.0
2,175,681	+	chpY	Synpcc7942_2093	0.63	-0.4
2,175,681	+	chpY	Synpcc7942_2093	0.63	-0.0
2,175,709	+	chpY	Synpcc7942_2093	0.65	-3.6
2,175,712	-	chpY	Synpcc7942_2093	0.65	+0.6
2,175,714	+	chpY	Synpcc7942_2093	0.65	-3.4
2,175,717	-	chpY	Synpcc7942_2093	0.66	-2.0
2,175,733	-	chpY	Synpcc7942_2093	0.67	-4.2
2,175,740	+	chpY	Synpcc7942_2093	0.67	-1.0
2,175,740	+	chpY	Synpcc7942_2093	0.67	-0.7
2,175,740	+	chpY	Synpcc7942_2093	0.67	-1.0
2,175,743	-	chpY	Synpcc7942_2093	0.68	-2.0
2,175,748	-	chpY	Synpcc7942_2093	0.68	-1.8
2,175,763	-	chpY	Synpcc7942_2093	0.69	-2.6
2,175,768	-	chpY	Synpcc7942_2093	0.69	-3.2
2,175,768	-	chpY	Synpcc7942_2093	0.69	-2.0
2,175,811	+	chpY	Synpcc7942_2093	0.73	-1.6
2,175,811	-	chpY	Synpcc7942_2093	0.73	-2.6
2,175,820	+	chpY	Synpcc7942_2093	0.73	-1.9
2,175,825	+	chpY	Synpcc7942_2093	0.74	-0.9
2,175,830	+	chpY	Synpcc7942_2093	0.74	-1.0
2,175,833	-	chpY	Synpcc7942_2093	0.74	-4.2
2,175,877	-	chpY	Synpcc7942_2093	0.78	-4.4
2,175,892	+	chpY	Synpcc7942_2093	0.79	-0.6
2,175,902	-	chpY	Synpcc7942_2093	0.80	-2.8
2,175,931	-	chpY	Synpcc7942_2093	0.82	-2.6
2,175,982	+	chpY	Synpcc7942_2093	0.86	-3.4
2,175,986	+	chpY	Synpcc7942_2093	0.86	-1.6
2,175,994	-	chpY	Synpcc7942_2093	0.87	-3.2
2,176,009	+	chpY	Synpcc7942_2093	0.88	-1.0
2,176,028	+	chpY	Synpcc7942_2093	0.90	-1.0
2,176,029	-	chpY	Synpcc7942_2093	0.90	-2.7
2,176,033	+				-2.4
2,176,033	+				-3.9
2,176,199	-				-0.6
2,176,199	-				-0.5
2,176,205	-				+0.7
2,176,259	+		Synpcc7942_2094	0.12	+1.5
2,176,267	-		Synpcc7942_2094	0.14	+1.1
2,176,281	+		Synpcc7942_2094	0.18	-1.1
2,176,285	-		Synpcc7942_2094	0.19	+0.5
2,176,298	+		Synpcc7942_2094	0.22	+0.1
2,176,329	-		Synpcc7942_2094	0.30	-0.0
2,176,329	-		Synpcc7942_2094	0.30	-1.0
2,176,353	+		Synpcc7942_2094	0.36	-0.6
2,176,356	+		Synpcc7942_2094	0.37	+0.5
2,176,377	-		Synpcc7942_2094	0.42	-0.3
2,176,380	+		Synpcc7942_2094	0.43	-1.4
2,176,388	-		Synpcc7942_2094	0.45	-1.9
2,176,442	-		Synpcc7942_2094	0.58	-0.6
2,176,447	-		Synpcc7942_2094	0.59	-2.6
2,176,613	-				-1.8
2,176,732	-				-0.2
2,176,732	-				+2.3
2,176,732	-				+0.9
2,176,732	-				-1.2
2,176,732	-				+0.1
2,176,774	+				+0.2
2,176,774	+				+1.5
2,176,774	+				+0.6
2,176,774	+				-2.3
2,176,774	+				+0.3
2,176,774	+				-0.4
2,176,782	-				+0.4
2,176,835	+				+0.9
2,176,841	-				+0.8
2,176,843	+				+0.5
2,176,845	+				-0.0
2,176,954	+		Synpcc7942_2095	0.26	-1.0
2,176,984	+		Synpcc7942_2095	0.34	+0.5
2,176,989	+		Synpcc7942_2095	0.35	+0.1
2,176,997	-		Synpcc7942_2095	0.37	-2.6
2,177,003	-		Synpcc7942_2095	0.39	+0.8
2,177,042	-		Synpcc7942_2095	0.49	+0.5
2,177,042	-		Synpcc7942_2095	0.49	-0.6
2,177,116	+		Synpcc7942_2095	0.68	-0.3
2,177,129	-		Synpcc7942_2095	0.71	+0.6
2,177,150	-		Synpcc7942_2095	0.77	+0.5