Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1321

Experiment: Rifampicin 0.0001953125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.0001953125 mg/ml
1,349,414	+				+1.0
1,349,417	-				-1.2
1,349,437	+		Synpcc7942_1320	0.10	-0.0
1,349,447	+		Synpcc7942_1320	0.11	+0.4
1,349,468	+		Synpcc7942_1320	0.13	-0.6
1,349,498	-		Synpcc7942_1320	0.17	+1.0
1,349,549	-		Synpcc7942_1320	0.22	+1.3
1,349,557	-		Synpcc7942_1320	0.23	-2.2
1,349,596	+		Synpcc7942_1320	0.27	+0.4
1,349,596	+		Synpcc7942_1320	0.27	+0.1
1,349,604	-		Synpcc7942_1320	0.28	+1.5
1,349,604	-		Synpcc7942_1320	0.28	-0.0
1,349,604	-		Synpcc7942_1320	0.28	+0.9
1,349,604	-		Synpcc7942_1320	0.28	-1.5
1,349,604	-		Synpcc7942_1320	0.28	-0.2
1,349,625	+		Synpcc7942_1320	0.30	-2.6
1,349,651	+		Synpcc7942_1320	0.32	-1.6
1,349,659	-		Synpcc7942_1320	0.33	+1.6
1,349,660	-		Synpcc7942_1320	0.33	+0.5
1,349,660	-		Synpcc7942_1320	0.33	+1.1
1,349,673	+		Synpcc7942_1320	0.35	-0.9
1,349,680	+		Synpcc7942_1320	0.36	-2.4
1,349,686	-		Synpcc7942_1320	0.36	+0.5
1,349,688	-		Synpcc7942_1320	0.36	-2.4
1,349,688	-		Synpcc7942_1320	0.36	+1.0
1,349,688	-		Synpcc7942_1320	0.36	+2.7
1,349,724	+		Synpcc7942_1320	0.40	-0.0
1,349,735	-		Synpcc7942_1320	0.41	-1.4
1,349,738	-		Synpcc7942_1320	0.42	+0.3
1,349,772	-		Synpcc7942_1320	0.45	-0.4
1,349,773	-		Synpcc7942_1320	0.45	+0.5
1,349,775	+		Synpcc7942_1320	0.45	+0.1
1,349,776	+		Synpcc7942_1320	0.46	+1.1
1,349,789	+		Synpcc7942_1320	0.47	+1.4
1,349,789	+		Synpcc7942_1320	0.47	+1.3
1,349,789	+		Synpcc7942_1320	0.47	-1.0
1,349,797	-		Synpcc7942_1320	0.48	+0.5
1,349,797	-		Synpcc7942_1320	0.48	-0.6
1,349,800	+		Synpcc7942_1320	0.48	+0.8
1,349,800	+		Synpcc7942_1320	0.48	-0.0
1,349,825	+		Synpcc7942_1320	0.51	-1.6
1,349,844	+		Synpcc7942_1320	0.53	-0.6
1,349,867	+		Synpcc7942_1320	0.55	+1.0
1,349,915	+		Synpcc7942_1320	0.60	-1.8
1,349,925	+		Synpcc7942_1320	0.61	+1.3
1,349,960	+		Synpcc7942_1320	0.65	+1.3
1,349,963	+		Synpcc7942_1320	0.65	-0.0
1,349,985	+		Synpcc7942_1320	0.67	+0.1
1,350,015	+		Synpcc7942_1320	0.71	-1.6
1,350,024	-		Synpcc7942_1320	0.71	-0.9
1,350,067	-		Synpcc7942_1320	0.76	+0.6
1,350,092	-		Synpcc7942_1320	0.79	-0.2
1,350,107	+		Synpcc7942_1320	0.80	-1.0
1,350,107	+		Synpcc7942_1320	0.80	+0.7
1,350,172	-		Synpcc7942_1320	0.87	-1.0
1,350,178	+		Synpcc7942_1320	0.88	-2.0
1,350,179	-		Synpcc7942_1320	0.88	+1.3
1,350,197	-		Synpcc7942_1320	0.90	-0.6
1,350,202	-				+2.0
1,350,261	-				+1.1
1,350,278	+				-0.0
1,350,295	-				-0.3
1,350,295	-				+0.8
1,350,336	+				+0.5
1,350,341	+				+0.3
1,350,349	-				-2.0
1,350,356	+				+1.6
1,350,356	+				-2.0
1,350,356	+				+2.8
1,350,356	+				+0.1
1,350,356	+				-1.0
1,350,356	+				-0.0
1,350,364	-				-2.4
1,350,364	-				+1.8
1,350,374	+				+1.2
1,350,387	-				+0.4
1,350,405	-				+1.8
1,350,412	+				-0.9
1,350,420	-				-2.0
1,350,420	-				-0.8
1,350,420	-				-1.0
1,350,420	-				+0.6
1,350,420	-				+1.5
1,350,420	-				+1.5
1,350,420	-				+0.4
1,350,434	-				-2.0
1,350,463	+				-1.0
1,350,463	+				-3.2
1,350,489	+				-0.0
1,350,500	+				+0.4
1,350,583	-		Synpcc7942_1321	0.17	-0.4
1,350,583	-		Synpcc7942_1321	0.17	-2.0
1,350,590	+		Synpcc7942_1321	0.17	-0.9
1,350,603	+		Synpcc7942_1321	0.19	-0.6
1,350,604	+		Synpcc7942_1321	0.19	-1.6
1,350,604	+		Synpcc7942_1321	0.19	-1.2
1,350,612	-		Synpcc7942_1321	0.19	-2.9
1,350,612	-		Synpcc7942_1321	0.19	-3.0
1,350,612	-		Synpcc7942_1321	0.19	-1.0
1,350,619	-		Synpcc7942_1321	0.20	-0.5
1,350,624	-		Synpcc7942_1321	0.21	+1.0
1,350,634	-		Synpcc7942_1321	0.22	-2.4
1,350,643	-		Synpcc7942_1321	0.22	-1.9
1,350,653	-		Synpcc7942_1321	0.23	-2.6
1,350,666	+		Synpcc7942_1321	0.25	-0.0
1,350,674	-		Synpcc7942_1321	0.25	-1.3
1,350,718	+		Synpcc7942_1321	0.30	+0.3
1,350,733	-		Synpcc7942_1321	0.31	-1.0
1,350,741	+		Synpcc7942_1321	0.32	-2.6
1,350,752	+		Synpcc7942_1321	0.33	-2.9
1,350,752	+				+1.0
1,350,760	-		Synpcc7942_1321	0.34	-3.0
1,350,770	-		Synpcc7942_1321	0.35	-0.5
1,350,802	+		Synpcc7942_1321	0.38	-0.0
1,350,802	-		Synpcc7942_1321	0.38	-1.0
1,350,802	-		Synpcc7942_1321	0.38	-1.0
1,350,877	+		Synpcc7942_1321	0.45	-0.0
1,350,877	+		Synpcc7942_1321	0.45	-1.0
1,350,877	+		Synpcc7942_1321	0.45	-1.0
1,350,920	-		Synpcc7942_1321	0.50	-2.6
1,350,945	-		Synpcc7942_1321	0.52	-1.3
1,350,945	-		Synpcc7942_1321	0.52	-2.6
1,350,977	-		Synpcc7942_1321	0.55	-2.6
1,351,043	+		Synpcc7942_1321	0.62	-2.1
1,351,049	+		Synpcc7942_1321	0.62	-2.6
1,351,068	-		Synpcc7942_1321	0.64	-0.0
1,351,095	+		Synpcc7942_1321	0.67	-1.0
1,351,103	+		Synpcc7942_1321	0.68	-0.3
1,351,122	+		Synpcc7942_1321	0.69	-1.0
1,351,149	-		Synpcc7942_1321	0.72	-3.6
1,351,166	+		Synpcc7942_1321	0.74	-1.0
1,351,166	+		Synpcc7942_1321	0.74	-3.4
1,351,174	-		Synpcc7942_1321	0.75	-1.0
1,351,176	-		Synpcc7942_1321	0.75	-1.6
1,351,199	+		Synpcc7942_1321	0.77	-0.0
1,351,207	-		Synpcc7942_1321	0.78	-1.0
1,351,207	-		Synpcc7942_1321	0.78	-2.0
1,351,207	-		Synpcc7942_1321	0.78	-2.5
1,351,207	-		Synpcc7942_1321	0.78	-1.0
1,351,207	-		Synpcc7942_1321	0.78	+0.4
1,351,207	-		Synpcc7942_1321	0.78	-1.6
1,351,207	-		Synpcc7942_1321	0.78	+1.5
1,351,207	-		Synpcc7942_1321	0.78	+1.0
1,351,224	+		Synpcc7942_1321	0.79	+0.4
1,351,226	-		Synpcc7942_1321	0.80	-2.9
1,351,234	+		Synpcc7942_1321	0.80	+0.4
1,351,254	+		Synpcc7942_1321	0.82	+1.5
1,351,271	+		Synpcc7942_1321	0.84	-1.0
1,351,272	-		Synpcc7942_1321	0.84	-2.6
1,351,275	-		Synpcc7942_1321	0.84	-0.3
1,351,279	-		Synpcc7942_1321	0.85	+0.2
1,351,321	+		Synpcc7942_1321	0.89	-0.8
1,351,321	+		Synpcc7942_1321	0.89	-0.7
1,351,321	+		Synpcc7942_1321	0.89	-1.0
1,351,329	-		Synpcc7942_1321	0.90	-0.2
1,351,329	-		Synpcc7942_1321	0.90	-1.1
1,351,357	+				-1.6
1,351,362	-				-1.3
1,351,375	-				-1.1
1,351,378	-				-0.9
1,351,389	+				+1.4
1,351,397	-				-1.1
1,351,423	-				-1.6
1,351,429	+				-1.8
1,351,429	+				+1.9
1,351,429	+				-3.8
1,351,432	-				-3.5
1,351,432	-				-2.6
1,351,437	-				+1.0
1,351,438	-				+0.9
1,351,450	+				+1.8
1,351,470	-				+0.9
1,351,472	+				-1.1
1,351,472	+				+1.2
1,351,480	-				-1.3
1,351,480	-				-0.1
1,351,480	-				+1.6
1,351,537	-				+0.3
1,351,592	-				+1.9
1,351,594	+				+0.9
1,351,610	+				-1.5
1,351,618	-				-1.6
1,351,637	-	psaE	Synpcc7942_1322	0.11	-1.9
1,351,637	-	psaE	Synpcc7942_1322	0.11	-1.9
1,351,687	+	psaE	Synpcc7942_1322	0.32	-1.1
1,351,724	+	psaE	Synpcc7942_1322	0.49	-0.1
1,351,740	+	psaE	Synpcc7942_1322	0.56	-0.6
1,351,830	+				-0.4
1,351,939	+				-0.1
1,351,950	+				+1.4
1,351,950	+				-0.1
1,351,958	-				+1.8
1,351,974	+				-1.3
1,351,980	+				+3.4
1,351,992	-				-0.1
1,352,002	+				-0.2
1,352,011	+				+0.4
1,352,030	+				-1.6
1,352,030	+				+0.1
1,352,030	+				-0.7
1,352,056	+	fpg	Synpcc7942_1323	0.13	-2.1
1,352,057	+	fpg	Synpcc7942_1323	0.13	-0.1
1,352,061	+	fpg	Synpcc7942_1323	0.13	-2.1
1,352,061	+	fpg	Synpcc7942_1323	0.13	-1.2
1,352,061	+	fpg	Synpcc7942_1323	0.13	-0.1
1,352,066	+	fpg	Synpcc7942_1323	0.14	+0.4
1,352,071	+	fpg	Synpcc7942_1323	0.14	-0.6
1,352,071	-	fpg	Synpcc7942_1323	0.14	-1.6
1,352,077	-	fpg	Synpcc7942_1323	0.15	-2.6
1,352,138	+	fpg	Synpcc7942_1323	0.22	+1.7
1,352,143	+	fpg	Synpcc7942_1323	0.23	+0.6
1,352,146	-	fpg	Synpcc7942_1323	0.23	-1.3
1,352,146	-	fpg	Synpcc7942_1323	0.23	-1.3
1,352,167	+	fpg	Synpcc7942_1323	0.26	-2.1
1,352,167	+	fpg	Synpcc7942_1323	0.26	+0.8
1,352,169	+	fpg	Synpcc7942_1323	0.26	+1.0
1,352,208	+	fpg	Synpcc7942_1323	0.31	-0.1
1,352,211	-	fpg	Synpcc7942_1323	0.31	-1.9
1,352,265	-	fpg	Synpcc7942_1323	0.37	-1.3
1,352,265	-				-1.1
1,352,308	+	fpg	Synpcc7942_1323	0.42	-2.1
1,352,313	+	fpg	Synpcc7942_1323	0.43	-1.1
1,352,316	-	fpg	Synpcc7942_1323	0.43	+0.2
1,352,321	-	fpg	Synpcc7942_1323	0.44	-1.1
1,352,378	-	fpg	Synpcc7942_1323	0.51	-0.6
1,352,387	-	fpg	Synpcc7942_1323	0.52	+0.5