Experiment: Rifampicin 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0919 and psaK1 are separated by 196 nucleotides psaK1 and Synpcc7942_0921 are separated by 117 nucleotides Synpcc7942_0921 and gltX overlap by 4 nucleotides gltX and mtaP overlap by 1 nucleotides mtaP and nblS are separated by 51 nucleotides
Synpcc7942_0919: Synpcc7942_0919 - hypothetical protein, at 926,077 to 926,523
_0919
Synpcc7942_0920: psaK1 - photosystem I reaction center, at 926,720 to 926,974
psaK1
Synpcc7942_0921: Synpcc7942_0921 - hypothetical protein, at 927,092 to 927,394
_0921
Synpcc7942_0922: gltX - Glutamate--tRNA ligase, at 927,391 to 928,293
gltX
Synpcc7942_0923: mtaP - 5'-methylthioadenosine phosphorylase, at 928,293 to 929,168
mtaP
Synpcc7942_0924: nblS - multi-sensor signal transduction histidine kinase, at 929,220 to 931,214
nblS
Position (kb) 927
928
929 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 926.436 kb on + strand, within Synpcc7942_0919 at 926.500 kb on - strand at 926.526 kb on - strand at 926.672 kb on + strand at 926.699 kb on + strand at 926.704 kb on + strand at 926.709 kb on + strand at 926.801 kb on + strand, within psaK1 at 926.806 kb on + strand, within psaK1 at 926.895 kb on + strand, within psaK1 at 926.933 kb on + strand, within psaK1 at 926.935 kb on + strand, within psaK1 at 927.007 kb on - strand at 927.048 kb on - strand at 927.114 kb on + strand at 927.122 kb on - strand at 927.122 kb on - strand at 927.165 kb on - strand, within Synpcc7942_0921 at 927.177 kb on - strand, within Synpcc7942_0921 at 927.177 kb on - strand, within Synpcc7942_0921 at 927.181 kb on + strand, within Synpcc7942_0921 at 927.201 kb on - strand, within Synpcc7942_0921 at 927.202 kb on + strand, within Synpcc7942_0921 at 927.275 kb on + strand, within Synpcc7942_0921 at 927.275 kb on + strand, within Synpcc7942_0921 at 927.339 kb on - strand, within Synpcc7942_0921 at 927.368 kb on - strand at 927.389 kb on - strand at 927.420 kb on + strand at 927.420 kb on + strand at 927.420 kb on + strand at 927.428 kb on + strand at 927.446 kb on + strand at 927.451 kb on + strand at 927.454 kb on - strand at 927.478 kb on + strand at 927.486 kb on - strand, within gltX at 927.508 kb on - strand, within gltX at 927.526 kb on + strand, within gltX at 927.526 kb on + strand, within gltX at 927.532 kb on + strand, within gltX at 927.540 kb on - strand, within gltX at 927.586 kb on + strand, within gltX at 927.591 kb on + strand, within gltX at 927.605 kb on + strand, within gltX at 927.605 kb on + strand, within gltX at 927.613 kb on - strand, within gltX at 927.617 kb on + strand, within gltX at 927.669 kb on + strand, within gltX at 927.670 kb on - strand, within gltX at 927.672 kb on + strand, within gltX at 927.672 kb on + strand, within gltX at 927.672 kb on + strand, within gltX at 927.672 kb on + strand, within gltX at 927.672 kb on + strand, within gltX at 927.672 kb on + strand, within gltX at 927.672 kb on + strand, within gltX at 927.672 kb on + strand, within gltX at 927.672 kb on + strand at 927.672 kb on + strand, within gltX at 927.674 kb on + strand, within gltX at 927.680 kb on - strand, within gltX at 927.680 kb on - strand, within gltX at 927.680 kb on - strand, within gltX at 927.680 kb on - strand, within gltX at 927.680 kb on - strand, within gltX at 927.680 kb on - strand, within gltX at 927.680 kb on - strand, within gltX at 927.680 kb on - strand, within gltX at 927.680 kb on - strand, within gltX at 927.680 kb on - strand, within gltX at 927.695 kb on + strand, within gltX at 927.695 kb on - strand, within gltX at 927.695 kb on - strand, within gltX at 927.716 kb on - strand, within gltX at 927.738 kb on - strand, within gltX at 927.738 kb on - strand, within gltX at 927.801 kb on + strand, within gltX at 927.834 kb on - strand, within gltX at 927.834 kb on - strand, within gltX at 927.903 kb on + strand, within gltX at 927.911 kb on - strand, within gltX at 927.939 kb on - strand, within gltX at 927.940 kb on + strand, within gltX at 927.973 kb on - strand, within gltX at 928.003 kb on + strand, within gltX at 928.003 kb on + strand, within gltX at 928.026 kb on + strand, within gltX at 928.026 kb on + strand, within gltX at 928.027 kb on + strand, within gltX at 928.035 kb on - strand, within gltX at 928.035 kb on - strand, within gltX at 928.037 kb on + strand, within gltX at 928.045 kb on - strand, within gltX at 928.060 kb on - strand, within gltX at 928.062 kb on + strand, within gltX at 928.062 kb on + strand, within gltX at 928.067 kb on + strand, within gltX at 928.067 kb on + strand, within gltX at 928.067 kb on + strand, within gltX at 928.077 kb on + strand, within gltX at 928.077 kb on + strand, within gltX at 928.082 kb on + strand, within gltX at 928.090 kb on - strand, within gltX at 928.090 kb on - strand, within gltX at 928.092 kb on + strand, within gltX at 928.092 kb on + strand, within gltX at 928.092 kb on + strand, within gltX at 928.100 kb on - strand, within gltX at 928.120 kb on - strand, within gltX at 928.133 kb on - strand, within gltX at 928.151 kb on - strand, within gltX at 928.152 kb on + strand, within gltX at 928.184 kb on - strand, within gltX at 928.198 kb on + strand, within gltX at 928.354 kb on - strand at 928.365 kb on + strand at 928.372 kb on + strand at 928.372 kb on + strand at 928.408 kb on - strand, within mtaP at 928.506 kb on + strand, within mtaP at 928.514 kb on - strand, within mtaP at 928.535 kb on - strand, within mtaP at 928.535 kb on - strand, within mtaP at 928.544 kb on + strand, within mtaP at 928.635 kb on + strand, within mtaP at 928.635 kb on + strand, within mtaP at 928.640 kb on + strand, within mtaP at 928.643 kb on - strand, within mtaP at 928.664 kb on + strand, within mtaP at 928.683 kb on + strand, within mtaP at 928.690 kb on + strand, within mtaP at 928.755 kb on + strand, within mtaP at 928.755 kb on + strand, within mtaP at 928.758 kb on - strand, within mtaP at 928.760 kb on + strand, within mtaP at 928.762 kb on + strand, within mtaP at 928.765 kb on + strand, within mtaP at 928.765 kb on + strand, within mtaP at 928.765 kb on + strand, within mtaP at 928.765 kb on + strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.773 kb on - strand, within mtaP at 928.825 kb on - strand, within mtaP at 928.866 kb on - strand, within mtaP at 928.878 kb on + strand, within mtaP at 928.892 kb on + strand, within mtaP at 928.899 kb on + strand, within mtaP at 928.909 kb on - strand, within mtaP at 929.032 kb on + strand, within mtaP at 929.032 kb on + strand, within mtaP at 929.104 kb on + strand at 929.104 kb on + strand at 929.112 kb on - strand at 929.127 kb on - strand at 929.137 kb on + strand at 929.172 kb on + strand at 929.201 kb on - strand at 929.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0001953125 mg/ml remove 926,436 + Synpcc7942_0919 0.80 +0.3 926,500 - +1.6 926,526 - +1.4 926,672 + -1.7 926,699 + -2.1 926,704 + -1.1 926,709 + -0.3 926,801 + psaK1 Synpcc7942_0920 0.32 +0.2 926,806 + psaK1 Synpcc7942_0920 0.34 +0.3 926,895 + psaK1 Synpcc7942_0920 0.69 -1.4 926,933 + psaK1 Synpcc7942_0920 0.84 +1.4 926,935 + psaK1 Synpcc7942_0920 0.84 -0.6 927,007 - +0.1 927,048 - +0.4 927,114 + +0.1 927,122 - +2.4 927,122 - +1.4 927,165 - Synpcc7942_0921 0.24 -2.1 927,177 - Synpcc7942_0921 0.28 -2.5 927,177 - Synpcc7942_0921 0.28 +0.9 927,181 + Synpcc7942_0921 0.29 -2.1 927,201 - Synpcc7942_0921 0.36 +0.9 927,202 + Synpcc7942_0921 0.36 -0.1 927,275 + Synpcc7942_0921 0.60 +2.2 927,275 + Synpcc7942_0921 0.60 +0.5 927,339 - Synpcc7942_0921 0.82 -0.7 927,368 - -1.1 927,389 - +0.3 927,420 + +0.9 927,420 + +0.2 927,420 + -0.5 927,428 + -0.2 927,446 + -0.4 927,451 + -0.6 927,454 - +0.4 927,478 + +2.2 927,486 - gltX Synpcc7942_0922 0.11 -0.5 927,508 - gltX Synpcc7942_0922 0.13 -2.1 927,526 + gltX Synpcc7942_0922 0.15 -1.1 927,526 + gltX Synpcc7942_0922 0.15 +0.4 927,532 + gltX Synpcc7942_0922 0.16 -0.3 927,540 - gltX Synpcc7942_0922 0.17 -1.1 927,586 + gltX Synpcc7942_0922 0.22 +0.4 927,591 + gltX Synpcc7942_0922 0.22 -0.6 927,605 + gltX Synpcc7942_0922 0.24 +0.9 927,605 + gltX Synpcc7942_0922 0.24 +1.1 927,613 - gltX Synpcc7942_0922 0.25 -1.4 927,617 + gltX Synpcc7942_0922 0.25 -2.1 927,669 + gltX Synpcc7942_0922 0.31 -0.1 927,670 - gltX Synpcc7942_0922 0.31 +0.6 927,672 + gltX Synpcc7942_0922 0.31 -0.1 927,672 + gltX Synpcc7942_0922 0.31 -1.7 927,672 + gltX Synpcc7942_0922 0.31 -3.0 927,672 + gltX Synpcc7942_0922 0.31 -0.7 927,672 + gltX Synpcc7942_0922 0.31 +0.3 927,672 + gltX Synpcc7942_0922 0.31 -2.5 927,672 + gltX Synpcc7942_0922 0.31 -0.5 927,672 + gltX Synpcc7942_0922 0.31 +0.5 927,672 + +1.4 927,672 + gltX Synpcc7942_0922 0.31 -0.1 927,674 + gltX Synpcc7942_0922 0.31 -0.7 927,680 - gltX Synpcc7942_0922 0.32 +0.5 927,680 - gltX Synpcc7942_0922 0.32 +0.5 927,680 - gltX Synpcc7942_0922 0.32 -0.8 927,680 - gltX Synpcc7942_0922 0.32 +0.2 927,680 - gltX Synpcc7942_0922 0.32 -1.3 927,680 - gltX Synpcc7942_0922 0.32 -1.1 927,680 - gltX Synpcc7942_0922 0.32 -1.5 927,680 - gltX Synpcc7942_0922 0.32 -0.3 927,680 - gltX Synpcc7942_0922 0.32 +0.1 927,680 - gltX Synpcc7942_0922 0.32 +0.4 927,695 + gltX Synpcc7942_0922 0.34 -1.7 927,695 - gltX Synpcc7942_0922 0.34 +0.1 927,695 - gltX Synpcc7942_0922 0.34 -0.6 927,716 - gltX Synpcc7942_0922 0.36 -1.8 927,738 - gltX Synpcc7942_0922 0.38 -0.1 927,738 - gltX Synpcc7942_0922 0.38 +0.2 927,801 + gltX Synpcc7942_0922 0.45 +0.9 927,834 - gltX Synpcc7942_0922 0.49 +0.2 927,834 - gltX Synpcc7942_0922 0.49 -1.7 927,903 + gltX Synpcc7942_0922 0.57 +0.7 927,911 - gltX Synpcc7942_0922 0.58 +0.6 927,939 - gltX Synpcc7942_0922 0.61 -0.8 927,940 + gltX Synpcc7942_0922 0.61 -1.1 927,973 - gltX Synpcc7942_0922 0.64 -0.7 928,003 + gltX Synpcc7942_0922 0.68 -0.3 928,003 + gltX Synpcc7942_0922 0.68 -0.1 928,026 + gltX Synpcc7942_0922 0.70 -0.6 928,026 + gltX Synpcc7942_0922 0.70 +2.4 928,027 + gltX Synpcc7942_0922 0.70 -1.5 928,035 - gltX Synpcc7942_0922 0.71 -0.7 928,035 - gltX Synpcc7942_0922 0.71 -3.6 928,037 + gltX Synpcc7942_0922 0.72 -1.3 928,045 - gltX Synpcc7942_0922 0.72 -1.5 928,060 - gltX Synpcc7942_0922 0.74 -0.5 928,062 + gltX Synpcc7942_0922 0.74 -0.0 928,062 + gltX Synpcc7942_0922 0.74 -0.3 928,067 + gltX Synpcc7942_0922 0.75 +1.6 928,067 + gltX Synpcc7942_0922 0.75 +0.6 928,067 + gltX Synpcc7942_0922 0.75 -1.1 928,077 + gltX Synpcc7942_0922 0.76 +1.3 928,077 + gltX Synpcc7942_0922 0.76 -1.7 928,082 + gltX Synpcc7942_0922 0.77 -0.2 928,090 - gltX Synpcc7942_0922 0.77 +0.9 928,090 - gltX Synpcc7942_0922 0.77 +1.2 928,092 + gltX Synpcc7942_0922 0.78 +0.5 928,092 + gltX Synpcc7942_0922 0.78 +1.7 928,092 + gltX Synpcc7942_0922 0.78 -1.7 928,100 - gltX Synpcc7942_0922 0.79 +1.0 928,120 - gltX Synpcc7942_0922 0.81 -0.5 928,133 - gltX Synpcc7942_0922 0.82 +0.1 928,151 - gltX Synpcc7942_0922 0.84 -1.3 928,152 + gltX Synpcc7942_0922 0.84 +0.1 928,184 - gltX Synpcc7942_0922 0.88 -1.1 928,198 + gltX Synpcc7942_0922 0.89 +2.0 928,354 - -0.1 928,365 + -0.6 928,372 + -2.0 928,372 + +0.1 928,408 - mtaP Synpcc7942_0923 0.13 -0.7 928,506 + mtaP Synpcc7942_0923 0.24 +0.6 928,514 - mtaP Synpcc7942_0923 0.25 +1.5 928,535 - mtaP Synpcc7942_0923 0.28 -0.7 928,535 - mtaP Synpcc7942_0923 0.28 +0.2 928,544 + mtaP Synpcc7942_0923 0.29 +0.5 928,635 + mtaP Synpcc7942_0923 0.39 +0.1 928,635 + mtaP Synpcc7942_0923 0.39 +1.2 928,640 + mtaP Synpcc7942_0923 0.40 -0.7 928,643 - mtaP Synpcc7942_0923 0.40 +1.9 928,664 + mtaP Synpcc7942_0923 0.42 -0.1 928,683 + mtaP Synpcc7942_0923 0.45 -0.8 928,690 + mtaP Synpcc7942_0923 0.45 -0.1 928,755 + mtaP Synpcc7942_0923 0.53 -3.3 928,755 + mtaP Synpcc7942_0923 0.53 +2.5 928,758 - mtaP Synpcc7942_0923 0.53 +0.9 928,760 + mtaP Synpcc7942_0923 0.53 +0.3 928,762 + mtaP Synpcc7942_0923 0.54 +1.6 928,765 + mtaP Synpcc7942_0923 0.54 -0.0 928,765 + mtaP Synpcc7942_0923 0.54 +1.0 928,765 + mtaP Synpcc7942_0923 0.54 -0.1 928,765 + mtaP Synpcc7942_0923 0.54 +0.1 928,768 - mtaP Synpcc7942_0923 0.54 +0.3 928,768 - mtaP Synpcc7942_0923 0.54 -1.7 928,768 - mtaP Synpcc7942_0923 0.54 -0.1 928,768 - mtaP Synpcc7942_0923 0.54 +0.7 928,768 - mtaP Synpcc7942_0923 0.54 -0.2 928,773 - mtaP Synpcc7942_0923 0.55 -0.3 928,825 - mtaP Synpcc7942_0923 0.61 -4.6 928,866 - mtaP Synpcc7942_0923 0.65 +0.9 928,878 + mtaP Synpcc7942_0923 0.67 -0.1 928,892 + mtaP Synpcc7942_0923 0.68 -1.1 928,899 + mtaP Synpcc7942_0923 0.69 -0.6 928,909 - mtaP Synpcc7942_0923 0.70 +0.9 929,032 + mtaP Synpcc7942_0923 0.84 -1.1 929,032 + mtaP Synpcc7942_0923 0.84 -0.4 929,104 + +1.9 929,104 + +0.9 929,112 - -0.8 929,127 - +0.3 929,137 + +0.1 929,172 + +0.5 929,201 - +2.0 929,260 + -2.5
Or see this region's nucleotide sequence