Experiment: Rifampicin 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldpA and ycf45 overlap by 1 nucleotides ycf45 and ilvD are separated by 176 nucleotides
Synpcc7942_0624: ldpA - light dependent period, at 615,361 to 616,419
ldpA
Synpcc7942_0625: ycf45 - Single-stranded nucleic acid binding R3H, at 616,419 to 618,185
ycf45
Synpcc7942_0626: ilvD - dihydroxy-acid dehydratase, at 618,362 to 620,221
ilvD
Position (kb) 616
617
618
619 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 615.467 kb on + strand, within ldpA at 615.467 kb on + strand, within ldpA at 615.474 kb on - strand, within ldpA at 615.475 kb on - strand, within ldpA at 615.519 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.658 kb on - strand, within ldpA at 615.662 kb on + strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.751 kb on + strand, within ldpA at 615.786 kb on + strand, within ldpA at 615.902 kb on + strand, within ldpA at 615.975 kb on + strand, within ldpA at 615.983 kb on - strand, within ldpA at 616.075 kb on - strand, within ldpA at 616.089 kb on - strand, within ldpA at 616.093 kb on + strand, within ldpA at 616.195 kb on + strand, within ldpA at 616.321 kb on + strand at 616.361 kb on + strand at 616.361 kb on + strand at 616.369 kb on - strand at 616.371 kb on + strand at 616.376 kb on + strand at 616.413 kb on + strand at 616.420 kb on + strand at 616.421 kb on - strand at 616.493 kb on + strand at 616.531 kb on + strand at 616.585 kb on + strand at 616.605 kb on - strand, within ycf45 at 616.621 kb on + strand, within ycf45 at 616.654 kb on + strand, within ycf45 at 616.659 kb on + strand, within ycf45 at 616.720 kb on + strand, within ycf45 at 616.728 kb on - strand, within ycf45 at 616.744 kb on - strand, within ycf45 at 616.744 kb on - strand, within ycf45 at 616.755 kb on + strand at 616.788 kb on - strand, within ycf45 at 616.790 kb on + strand, within ycf45 at 616.800 kb on + strand, within ycf45 at 616.808 kb on - strand, within ycf45 at 616.840 kb on - strand, within ycf45 at 616.840 kb on - strand, within ycf45 at 616.865 kb on - strand, within ycf45 at 616.867 kb on + strand, within ycf45 at 616.885 kb on + strand, within ycf45 at 616.885 kb on + strand, within ycf45 at 616.918 kb on + strand, within ycf45 at 616.928 kb on + strand, within ycf45 at 616.936 kb on - strand, within ycf45 at 616.936 kb on - strand, within ycf45 at 616.937 kb on + strand, within ycf45 at 617.042 kb on - strand, within ycf45 at 617.067 kb on - strand, within ycf45 at 617.140 kb on + strand, within ycf45 at 617.152 kb on + strand, within ycf45 at 617.154 kb on + strand, within ycf45 at 617.167 kb on + strand, within ycf45 at 617.175 kb on - strand, within ycf45 at 617.300 kb on + strand, within ycf45 at 617.351 kb on + strand, within ycf45 at 617.378 kb on - strand, within ycf45 at 617.383 kb on - strand, within ycf45 at 617.386 kb on - strand, within ycf45 at 617.389 kb on + strand, within ycf45 at 617.389 kb on + strand, within ycf45 at 617.397 kb on - strand, within ycf45 at 617.397 kb on - strand, within ycf45 at 617.411 kb on + strand, within ycf45 at 617.414 kb on - strand, within ycf45 at 617.505 kb on - strand, within ycf45 at 617.574 kb on + strand, within ycf45 at 617.574 kb on + strand, within ycf45 at 617.574 kb on + strand, within ycf45 at 617.611 kb on + strand at 617.611 kb on + strand, within ycf45 at 617.611 kb on + strand, within ycf45 at 617.611 kb on + strand, within ycf45 at 617.619 kb on - strand, within ycf45 at 617.619 kb on - strand, within ycf45 at 617.619 kb on - strand, within ycf45 at 617.619 kb on - strand, within ycf45 at 617.619 kb on - strand, within ycf45 at 617.631 kb on - strand, within ycf45 at 617.631 kb on - strand, within ycf45 at 617.631 kb on - strand, within ycf45 at 617.631 kb on - strand, within ycf45 at 617.646 kb on + strand, within ycf45 at 617.646 kb on + strand, within ycf45 at 617.646 kb on + strand, within ycf45 at 617.681 kb on - strand, within ycf45 at 617.696 kb on - strand, within ycf45 at 617.699 kb on + strand at 617.720 kb on - strand, within ycf45 at 617.722 kb on + strand, within ycf45 at 617.730 kb on - strand, within ycf45 at 617.730 kb on - strand, within ycf45 at 617.732 kb on + strand, within ycf45 at 617.765 kb on - strand, within ycf45 at 617.773 kb on - strand, within ycf45 at 617.813 kb on + strand, within ycf45 at 617.813 kb on + strand at 617.821 kb on - strand, within ycf45 at 617.837 kb on - strand, within ycf45 at 617.842 kb on - strand, within ycf45 at 617.879 kb on + strand, within ycf45 at 617.879 kb on - strand, within ycf45 at 617.887 kb on - strand, within ycf45 at 617.908 kb on + strand, within ycf45 at 617.912 kb on + strand, within ycf45 at 617.926 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.959 kb on + strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.967 kb on - strand, within ycf45 at 617.969 kb on + strand, within ycf45 at 617.969 kb on + strand, within ycf45 at 617.969 kb on + strand, within ycf45 at 617.969 kb on + strand, within ycf45 at 617.977 kb on - strand, within ycf45 at 617.977 kb on - strand, within ycf45 at 617.996 kb on + strand, within ycf45 at 618.028 kb on - strand at 618.058 kb on - strand at 618.206 kb on + strand at 618.212 kb on - strand at 618.212 kb on - strand at 618.271 kb on + strand at 618.348 kb on - strand at 618.366 kb on - strand at 618.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0001953125 mg/ml remove 615,467 + ldpA Synpcc7942_0624 0.10 -1.1 615,467 + ldpA Synpcc7942_0624 0.10 -0.8 615,474 - ldpA Synpcc7942_0624 0.11 -2.4 615,475 - ldpA Synpcc7942_0624 0.11 -1.1 615,519 + ldpA Synpcc7942_0624 0.15 -1.1 615,593 + ldpA Synpcc7942_0624 0.22 -2.6 615,593 + ldpA Synpcc7942_0624 0.22 -3.8 615,658 - ldpA Synpcc7942_0624 0.28 -0.1 615,662 + ldpA Synpcc7942_0624 0.28 -3.7 615,670 - ldpA Synpcc7942_0624 0.29 -0.7 615,670 - ldpA Synpcc7942_0624 0.29 -2.9 615,670 - ldpA Synpcc7942_0624 0.29 -0.3 615,751 + ldpA Synpcc7942_0624 0.37 -1.7 615,786 + ldpA Synpcc7942_0624 0.40 -2.1 615,902 + ldpA Synpcc7942_0624 0.51 -2.7 615,975 + ldpA Synpcc7942_0624 0.58 -2.1 615,983 - ldpA Synpcc7942_0624 0.59 -1.7 616,075 - ldpA Synpcc7942_0624 0.67 -1.1 616,089 - ldpA Synpcc7942_0624 0.69 -3.1 616,093 + ldpA Synpcc7942_0624 0.69 -2.4 616,195 + ldpA Synpcc7942_0624 0.79 -4.4 616,321 + -3.1 616,361 + +1.2 616,361 + -0.1 616,369 - -1.7 616,371 + +2.5 616,376 + +2.1 616,413 + -0.1 616,420 + +0.9 616,421 - -1.1 616,493 + -3.9 616,531 + -1.1 616,585 + -2.3 616,605 - ycf45 Synpcc7942_0625 0.11 -2.9 616,621 + ycf45 Synpcc7942_0625 0.11 -2.7 616,654 + ycf45 Synpcc7942_0625 0.13 -1.1 616,659 + ycf45 Synpcc7942_0625 0.14 -0.4 616,720 + ycf45 Synpcc7942_0625 0.17 +0.1 616,728 - ycf45 Synpcc7942_0625 0.17 -1.1 616,744 - ycf45 Synpcc7942_0625 0.18 -0.9 616,744 - ycf45 Synpcc7942_0625 0.18 -2.1 616,755 + -0.1 616,788 - ycf45 Synpcc7942_0625 0.21 -1.3 616,790 + ycf45 Synpcc7942_0625 0.21 -0.2 616,800 + ycf45 Synpcc7942_0625 0.22 -2.3 616,808 - ycf45 Synpcc7942_0625 0.22 -1.1 616,840 - ycf45 Synpcc7942_0625 0.24 -1.1 616,840 - ycf45 Synpcc7942_0625 0.24 -2.4 616,865 - ycf45 Synpcc7942_0625 0.25 -1.1 616,867 + ycf45 Synpcc7942_0625 0.25 -1.1 616,885 + ycf45 Synpcc7942_0625 0.26 -1.8 616,885 + ycf45 Synpcc7942_0625 0.26 -1.7 616,918 + ycf45 Synpcc7942_0625 0.28 -3.1 616,928 + ycf45 Synpcc7942_0625 0.29 -1.1 616,936 - ycf45 Synpcc7942_0625 0.29 -0.6 616,936 - ycf45 Synpcc7942_0625 0.29 -2.4 616,937 + ycf45 Synpcc7942_0625 0.29 -0.1 617,042 - ycf45 Synpcc7942_0625 0.35 -0.5 617,067 - ycf45 Synpcc7942_0625 0.37 -3.3 617,140 + ycf45 Synpcc7942_0625 0.41 +0.2 617,152 + ycf45 Synpcc7942_0625 0.41 -1.1 617,154 + ycf45 Synpcc7942_0625 0.42 -1.1 617,167 + ycf45 Synpcc7942_0625 0.42 -1.4 617,175 - ycf45 Synpcc7942_0625 0.43 -0.1 617,300 + ycf45 Synpcc7942_0625 0.50 +0.2 617,351 + ycf45 Synpcc7942_0625 0.53 -0.7 617,378 - ycf45 Synpcc7942_0625 0.54 +0.5 617,383 - ycf45 Synpcc7942_0625 0.55 -2.4 617,386 - ycf45 Synpcc7942_0625 0.55 -1.5 617,389 + ycf45 Synpcc7942_0625 0.55 -0.1 617,389 + ycf45 Synpcc7942_0625 0.55 +0.4 617,397 - ycf45 Synpcc7942_0625 0.55 -0.7 617,397 - ycf45 Synpcc7942_0625 0.55 -0.5 617,411 + ycf45 Synpcc7942_0625 0.56 -1.7 617,414 - ycf45 Synpcc7942_0625 0.56 -2.7 617,505 - ycf45 Synpcc7942_0625 0.61 -2.8 617,574 + ycf45 Synpcc7942_0625 0.65 -1.0 617,574 + ycf45 Synpcc7942_0625 0.65 -0.3 617,574 + ycf45 Synpcc7942_0625 0.65 -0.6 617,611 + +0.3 617,611 + ycf45 Synpcc7942_0625 0.67 -1.1 617,611 + ycf45 Synpcc7942_0625 0.67 -0.6 617,611 + ycf45 Synpcc7942_0625 0.67 -2.1 617,619 - ycf45 Synpcc7942_0625 0.68 -2.7 617,619 - ycf45 Synpcc7942_0625 0.68 -0.3 617,619 - ycf45 Synpcc7942_0625 0.68 -0.1 617,619 - ycf45 Synpcc7942_0625 0.68 -2.0 617,619 - ycf45 Synpcc7942_0625 0.68 -3.9 617,631 - ycf45 Synpcc7942_0625 0.69 -1.1 617,631 - ycf45 Synpcc7942_0625 0.69 -1.1 617,631 - ycf45 Synpcc7942_0625 0.69 -0.6 617,631 - ycf45 Synpcc7942_0625 0.69 -0.3 617,646 + ycf45 Synpcc7942_0625 0.69 -1.2 617,646 + ycf45 Synpcc7942_0625 0.69 -1.6 617,646 + ycf45 Synpcc7942_0625 0.69 -1.9 617,681 - ycf45 Synpcc7942_0625 0.71 -0.1 617,696 - ycf45 Synpcc7942_0625 0.72 -3.4 617,699 + -0.1 617,720 - ycf45 Synpcc7942_0625 0.74 -2.3 617,722 + ycf45 Synpcc7942_0625 0.74 +2.9 617,730 - ycf45 Synpcc7942_0625 0.74 -0.8 617,730 - ycf45 Synpcc7942_0625 0.74 -1.1 617,732 + ycf45 Synpcc7942_0625 0.74 -2.7 617,765 - ycf45 Synpcc7942_0625 0.76 -2.1 617,773 - ycf45 Synpcc7942_0625 0.77 -0.1 617,813 + ycf45 Synpcc7942_0625 0.79 -1.1 617,813 + -1.7 617,821 - ycf45 Synpcc7942_0625 0.79 -1.1 617,837 - ycf45 Synpcc7942_0625 0.80 -1.3 617,842 - ycf45 Synpcc7942_0625 0.81 +0.0 617,879 + ycf45 Synpcc7942_0625 0.83 -2.7 617,879 - ycf45 Synpcc7942_0625 0.83 +1.3 617,887 - ycf45 Synpcc7942_0625 0.83 -0.1 617,908 + ycf45 Synpcc7942_0625 0.84 -2.1 617,912 + ycf45 Synpcc7942_0625 0.84 -2.3 617,926 + ycf45 Synpcc7942_0625 0.85 -0.7 617,959 + ycf45 Synpcc7942_0625 0.87 -1.7 617,959 + ycf45 Synpcc7942_0625 0.87 -3.1 617,959 + ycf45 Synpcc7942_0625 0.87 -0.5 617,959 + ycf45 Synpcc7942_0625 0.87 +0.6 617,959 + ycf45 Synpcc7942_0625 0.87 -3.6 617,959 + -0.1 617,959 + ycf45 Synpcc7942_0625 0.87 -0.7 617,959 + ycf45 Synpcc7942_0625 0.87 -3.0 617,959 + ycf45 Synpcc7942_0625 0.87 -0.1 617,959 + ycf45 Synpcc7942_0625 0.87 -2.1 617,959 + ycf45 Synpcc7942_0625 0.87 +1.8 617,959 + ycf45 Synpcc7942_0625 0.87 -0.2 617,967 - ycf45 Synpcc7942_0625 0.88 -0.1 617,967 - ycf45 Synpcc7942_0625 0.88 -2.7 617,967 - ycf45 Synpcc7942_0625 0.88 +0.1 617,967 - ycf45 Synpcc7942_0625 0.88 -2.8 617,967 - ycf45 Synpcc7942_0625 0.88 +0.9 617,967 - ycf45 Synpcc7942_0625 0.88 +1.2 617,967 - ycf45 Synpcc7942_0625 0.88 -1.2 617,967 - ycf45 Synpcc7942_0625 0.88 -2.1 617,967 - ycf45 Synpcc7942_0625 0.88 -3.2 617,967 - ycf45 Synpcc7942_0625 0.88 -2.4 617,967 - ycf45 Synpcc7942_0625 0.88 -2.4 617,967 - ycf45 Synpcc7942_0625 0.88 +0.2 617,969 + ycf45 Synpcc7942_0625 0.88 -0.4 617,969 + ycf45 Synpcc7942_0625 0.88 +2.5 617,969 + ycf45 Synpcc7942_0625 0.88 -1.4 617,969 + ycf45 Synpcc7942_0625 0.88 -1.5 617,977 - ycf45 Synpcc7942_0625 0.88 -0.8 617,977 - ycf45 Synpcc7942_0625 0.88 -3.3 617,996 + ycf45 Synpcc7942_0625 0.89 -1.6 618,028 - -1.7 618,058 - +2.1 618,206 + -0.3 618,212 - +0.8 618,212 - +1.6 618,271 + +1.2 618,348 - -1.0 618,366 - +3.1 618,366 - -0.9
Or see this region's nucleotide sequence